RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Hnrnpul1Q8VDM6 859 aaKnown RBP19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Prc1Q99K43 603 aaKnown RBP19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Col15a1O35206 1367 aa19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Dhx38Q80X98 1228 aa19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Safb2Q80YR5 991 aaKnown RBP19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Stxbp4Q9WV89 557 aa19.46■□□□□ 0.71
Ctcf-201ENSMUST00000005841 Diaph1O08808 1255 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Washc4Q3UMB9 1173 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 NfkbibQ60778 359 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Iffo2Q8R2V2 512 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Chaf1aQ9QWF0 911 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ttll7A4Q9F0 912 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Samd1D3YXK1 519 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Cep63Q3UPP8 700 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 ItgadQ3V0T4 1168 aa19.45■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Bin1O08539 588 aaKnown RBP19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Recql4Q75NR7 1216 aaKnown RBP19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Erc1Q99MI1 1120 aa19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Dpf1Q9QX66 387 aa19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 CrebrfQ8CDG5 640 aaKnown RBP19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Syf2Q9D198 242 aaKnown RBP19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Myh1Q5SX40 1942 aa19.44■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ddx46Q569Z5 1032 aaKnown RBP19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 DonsonQ9QXP4 560 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Sik3Q6P4S6 1311 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Myh15E9Q264 1925 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Tmc2Q8R4P4 888 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Eif2ak3Q9Z2B5 1114 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Lrp5Q91VN0 1614 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 BaatQ91X34 420 aa19.43■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Nop9Q8BMC4 636 aaKnown RBP19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ppfibp1Q8C8U0 969 aaKnown RBP19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ppil4Q9CXG3 492 aaKnown RBP19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Pla2g4bP0C871 782 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Plekhf1Q3TB82 279 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Lrrc1Q80VQ1 524 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Pms1Q8K119 917 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Jarid2Q62315 1234 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Fchsd1Q6PFY1 688 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Zkscan3Q91VW9 553 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Hsd3b7Q9EQC1 369 aa19.42■□□□□ 0.7
Ctcf-201ENSMUST00000005841 1700017N19RikA0A087WPJ1 469 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Gm29094F6Q785 221 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Hspa2P17156 633 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Haus7Q8BKT8 364 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 MthfsQ9D110 203 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 FosbP13346 338 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ppfia3P60469 1194 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Ppp4r3aQ6P2K6 820 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Uap1Q91YN5 522 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Prpf6Q91YR7 941 aaKnown RBP19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Q66JV7 365 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 U2af1l4Q8BGJ9 220 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Cbx8Q9QXV1 362 aa19.41■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Naaladl2A0A0N4SUJ3 795 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Dnajc25A2ALW5 357 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Llgl2Q3TJ91 1027 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Hspa4Q61316 841 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Fsd1Q7TPM6 496 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Trim56Q80VI1 734 aaKnown RBP19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Gdap1l1Q8VE33 370 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Brms1Q99N20 246 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Zcchc17Q9ESX4 241 aaKnown RBP19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Igsf3Q6ZQA6 1194 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Slc4a1P04919 929 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Krt39Q6IFX4 482 aa19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Acot9Q9R0X4 439 aaKnown RBP19.4■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Map10Q8BJS7 891 aa19.39■□□□□ 0.7
Ctcf-201ENSMUST00000005841 Rnaseh1O70338 285 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ttll12Q3UDE2 639 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Vps37dQ810I0 261 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Lmbrd2Q8C561 694 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Evc2Q8K1G2 1220 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Myh2G3UW82 1942 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ankrd31A0A140LI88 1765 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Sycp2lA0A0M3U1B0 842 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Gm10563F6WIE4 79 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Tube1Q9D6T1 475 aa19.39■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Gm20425E9Q035 978 aaKnown RBP19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 SrprbP47758 269 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ccdc114Q3UX62 658 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Hpcal4Q8BGZ1 191 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Enox1Q8BHR2 643 aaKnown RBP19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Vmn1r218Q8R261 298 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 IqcgQ80W32 419 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Slitrk3Q810B9 980 aa19.38■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Pde11aP0C1Q2 933 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Nek1P51954 1203 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Stk38Q91VJ4 465 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 ToporslQ9D2F8 683 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ugt1a6bK9J7B2 531 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ugt1a6Q64435 531 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ugt1a7cQ6ZQM8 531 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Klhl40Q9D783 621 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Pdzd9Q9D9M4 266 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 RabggtaQ9JHK4 567 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Ccdc191J3QQ27 883 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Srek1Q8BZX4 494 aaKnown RBP19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Sirt2Q8VDQ8 389 aa19.37■□□□□ 0.69
Ctcf-201ENSMUST00000005841 Rrp1bQ91YK2 724 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 22,080 RNA–protein pairs in 86.9 ms