Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm25239-201ENSMUST00000174915 86 ntBASIC44.96■■■■■ 4.79
Trim56Q80VI1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41.42■■■■■ 4.22
Trim56Q80VI1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
Trim56Q80VI1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.54■■■■■ 4.08
Trim56Q80VI1 Gm15042-201ENSMUST00000120212 883 ntBASIC39.57■■■■□ 3.93
Trim56Q80VI1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
Trim56Q80VI1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.13■■■■□ 3.86
Trim56Q80VI1 Gm24109-201ENSMUST00000175489 103 ntBASIC38.87■■■■□ 3.81
Trim56Q80VI1 Gm15045-201ENSMUST00000117359 883 ntBASIC38.83■■■■□ 3.81
Trim56Q80VI1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
Trim56Q80VI1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
Trim56Q80VI1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37.91■■■■□ 3.66
Trim56Q80VI1 Psd-208ENSMUST00000224556 2034 ntBASIC37.53■■■■□ 3.6
Trim56Q80VI1 Gm23366-201ENSMUST00000175022 89 ntBASIC37.51■■■■□ 3.6
Trim56Q80VI1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.45■■■■□ 3.59
Trim56Q80VI1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
Trim56Q80VI1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.35■■■■□ 3.57
Trim56Q80VI1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.12■■■■□ 3.53
Trim56Q80VI1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
Trim56Q80VI1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.01■■■■□ 3.51
Trim56Q80VI1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
Trim56Q80VI1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
Trim56Q80VI1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.83■■■■□ 3.49
Trim56Q80VI1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.7■■■■□ 3.47
Trim56Q80VI1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC36.55■■■■□ 3.44
Trim56Q80VI1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.54■■■■□ 3.44
Trim56Q80VI1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
Trim56Q80VI1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.44■■■■□ 3.42
Trim56Q80VI1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36.33■■■■□ 3.41
Trim56Q80VI1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
Trim56Q80VI1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Trim56Q80VI1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.05■■■■□ 3.36
Trim56Q80VI1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.99■■■■□ 3.35
Trim56Q80VI1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.98■■■■□ 3.35
Trim56Q80VI1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.87■■■■□ 3.33
Trim56Q80VI1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.57■■■■□ 3.28
Trim56Q80VI1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Trim56Q80VI1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
Trim56Q80VI1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
Trim56Q80VI1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Trim56Q80VI1 Gm25238-201ENSMUST00000174914 89 ntBASIC35.42■■■■□ 3.26
Trim56Q80VI1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
Trim56Q80VI1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
Trim56Q80VI1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Trim56Q80VI1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.27■■■■□ 3.24
Trim56Q80VI1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
Trim56Q80VI1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35.22■■■■□ 3.23
Trim56Q80VI1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
Trim56Q80VI1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.12■■■■□ 3.21
Trim56Q80VI1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
Trim56Q80VI1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Trim56Q80VI1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
Trim56Q80VI1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
Trim56Q80VI1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Trim56Q80VI1 Gm27325-201ENSMUST00000175467 74 ntBASIC34.76■■■■□ 3.16
Trim56Q80VI1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Trim56Q80VI1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.7■■■■□ 3.15
Trim56Q80VI1 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.65■■■■□ 3.14
Trim56Q80VI1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.64■■■■□ 3.14
Trim56Q80VI1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Trim56Q80VI1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
Trim56Q80VI1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.49■■■■□ 3.11
Trim56Q80VI1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.43■■■■□ 3.1
Trim56Q80VI1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
Trim56Q80VI1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34.38■■■■□ 3.09
Trim56Q80VI1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
Trim56Q80VI1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
Trim56Q80VI1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.27■■■■□ 3.08
Trim56Q80VI1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.26■■■■□ 3.08
Trim56Q80VI1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC34.22■■■■□ 3.07
Trim56Q80VI1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Trim56Q80VI1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.21■■■■□ 3.07
Trim56Q80VI1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
Trim56Q80VI1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.18■■■■□ 3.06
Trim56Q80VI1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
Trim56Q80VI1 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.14■■■■□ 3.06
Trim56Q80VI1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.05
Trim56Q80VI1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC34.04■■■■□ 3.04
Trim56Q80VI1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.01■■■■□ 3.04
Trim56Q80VI1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.91■■■■□ 3.02
Trim56Q80VI1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Trim56Q80VI1 Rab21-202ENSMUST00000218831 843 ntBASIC33.88■■■■□ 3.01
Trim56Q80VI1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Trim56Q80VI1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Trim56Q80VI1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
Trim56Q80VI1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.72■■■□□ 2.99
Trim56Q80VI1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
Trim56Q80VI1 Gm25262-201ENSMUST00000174934 133 ntBASIC33.65■■■□□ 2.98
Trim56Q80VI1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.62■■■□□ 2.97
Trim56Q80VI1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.55■■■□□ 2.96
Trim56Q80VI1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.54■■■□□ 2.96
Trim56Q80VI1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
Trim56Q80VI1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.45■■■□□ 2.94
Trim56Q80VI1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Trim56Q80VI1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.42■■■□□ 2.94
Trim56Q80VI1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Trim56Q80VI1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Trim56Q80VI1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Trim56Q80VI1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Trim56Q80VI1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms