RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 TMEM56Q96MV1 263 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 KIR3DX1Q9H7L2 352 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 ANAPC10Q9UM13 185 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 TMEM56-RWDD3S4R434 201 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 DNAJC13O75165 2243 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 IGLC7A0M8Q6 106 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 PRSS38A1L453 326 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 CD300LBA8K4G0 201 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 TUSC2O75896 110 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 HOXC12P31275 282 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 MEF2CQ06413 473 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 PLCXD2Q0VAA5 305 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 EBLN2Q6P2I7 272 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 TAF15Q92804 592 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 TM2D1Q9BX74 207 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 CLEC1BQ9P126 229 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 DMXL2Q8TDJ6 3036 aa6.16□□□□□ -1.42
LIMCH1-207ENST00000508466 TRAV30A0A087WSZ9 112 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 K7ERU9 68 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 PIAS2O75928 621 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 CCL2P13500 99 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 CD99P14209 185 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 UCP1P25874 307 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 SSTR5P35346 364 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 CAPZBP47756 277 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 CAMPP49913 170 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 ZNF157P51786 506 aaPredicted RBP6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 PAFAH1B2P68402 229 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 SLC38A11Q08AI6 406 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 TNXAQ16473 311 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 HLA-DQA1Q5Y7H0 255 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 VASH2Q86V25 355 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 TCTEX1D1Q8N7M0 179 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 OR4F17Q8NGA8 305 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 OR10G8Q8NGN5 311 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 OR2T6Q8NHC8 308 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 SNIP1Q8TAD8 396 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 NT5CQ8TCD5 201 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 Q96M66 194 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 KCNK17Q96T54 332 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 QTRT1Q9BXR0 403 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 PLEK2Q9NYT0 353 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 KCNS2Q9ULS6 477 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 Q9Y3F1 56 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 TNRC6AQ8NDV7 1962 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 TACC2O95359 2948 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 SVEP1Q4LDE5 3571 aa6.15□□□□□ -1.42
LIMCH1-207ENST00000508466 LOC102723996A0A087X1L8 192 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 EDDM13A0A1B0GTR0 161 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 SLC22A20A6NK97 555 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 FOXI3A8MTJ6 420 aaPredicted RBP6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 NEURL1O76050 574 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 IGHV3-9P01782 118 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 TIMP3P35625 211 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 FOXA3P55318 350 aaPredicted RBP6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 SMIM21Q3B7S5 101 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 OR4A5Q8NH83 315 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 SSC4DQ8WTU2 575 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 MBD3L1Q8WWY6 194 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 MTIF3Q9H2K0 278 aaKnown RBP6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 LYRM4Q9HD34 91 aa6.15□□□□□ -1.43
LIMCH1-207ENST00000508466 FAM231BA6NCW3 169 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 K7EN84 100 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 TRAF3IP2O43734 574 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 SYNGR2O43760 224 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 EFNA2O43921 213 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 ACTL6BO94805 426 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 IGHV3-13P01766 116 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 IGHV3-7P01780 117 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 MYF5P13349 255 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 VDAC1P21796 283 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 NPY1RP25929 384 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 SRP14P37108 136 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 LGALS7P47929 136 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 UBE2NP61088 152 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 RPL8P62917 257 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 FUT7Q11130 342 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 CST6Q15828 149 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 NMSQ5H8A3 153 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 FNDC7Q5VTL7 733 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 C9orf135Q5VTT2 229 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 SAMD13Q5VXD3 122 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 ACP7Q6ZNF0 438 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 C20orf204Q6ZNR8 217 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 H1FNTQ75WM6 255 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 ZIC4Q8N9L1 334 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 CCDC71LQ8N9Z2 235 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 LMX1AQ8TE12 382 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 SSMEM1Q8WWF3 244 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 NANOS1Q8WY41 292 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 ANAPC16Q96DE5 110 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 CD207Q9UJ71 328 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 ROS1P08922 2347 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 TRAV26-1A0A087WT03 109 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 GAGE10A6NGK3 116 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 GJE1A6NN92 205 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 KLK10O43240 276 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 FOXH1O75593 365 aa6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 PGLYRP1O75594 196 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-207ENST00000508466 NRASP01111 189 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms