RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GCDHQ92947 438 aaPredicted RBP24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 Q9N2K0 584 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 ZNF230Q9UIE0 474 aaPredicted RBP24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 MRPS7Q9Y2R9 242 aaKnown RBP24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 FAM172BPA6NC97 362 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 SPINT2O43291 252 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 SSX5O60225 188 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 HBZP02008 142 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 MELTFP08582 738 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 SRP14P37108 136 aaKnown RBP24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 HMGN3Q15651 99 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 OR1L1Q8NH94 360 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 MAFIPQ8WZ33 124 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 SUCNR1Q9BXA5 334 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 IDI2-AS1Q9NZ38 188 aa24.2■■□□□ 1.47
LIMCH1-211ENST00000509638 CENPVL3A0A0U1RRI6 287 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 POM121CA8CG34 1229 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 NFYBP25208 207 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 HLA-DRB3P79483 266 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 HCP5Q6MZN7 132 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 C5orf24Q7Z6I8 188 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 BEX2Q9BXY8 128 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 TMEM133Q9H2Q1 129 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 RAB9BQ9NP90 201 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 MGAT4AQ9UM21 535 aa24.2■■□□□ 1.46
LIMCH1-211ENST00000509638 DTYMKP23919 212 aa24.19■■□□□ 1.46
LIMCH1-211ENST00000509638 FPR2P25090 351 aa24.19■■□□□ 1.46
LIMCH1-211ENST00000509638 SNX29P2Q8IUI4 249 aa24.19■■□□□ 1.46
LIMCH1-211ENST00000509638 HEXA-AS1Q9H8Q6 139 aa24.19■■□□□ 1.46
LIMCH1-211ENST00000509638 HLA-DQB1P01920 261 aa24.18■■□□□ 1.46
LIMCH1-211ENST00000509638 GUCA2AQ02747 115 aa24.18■■□□□ 1.46
LIMCH1-211ENST00000509638 PNKDQ8N490 385 aa24.18■■□□□ 1.46
LIMCH1-211ENST00000509638 DIRAS2Q96HU8 199 aa24.18■■□□□ 1.46
LIMCH1-211ENST00000509638 F2RL2O00254 374 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 CNPY1Q3B7I2 92 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 OR52W1Q6IF63 320 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 OR10A7Q8NGE5 316 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 OR13D1Q8NGV5 346 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 ZFHX3Q15911 3703 aa24.17■■□□□ 1.46
LIMCH1-211ENST00000509638 IGHV1-69DA0A0B4J2H0 117 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 SDCBPO00560 298 aaPredicted RBP24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 IGHV1-69P01742 117 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 CHRFAM7AQ494W8 412 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 UTF1Q5T230 341 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 RUSC1-AS1Q66K80 236 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 BRD3OSQ6XYD6 125 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 NUP50Q9UKX7 468 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 IGHV2-26A0A0B4J1V2 119 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 A0A1W2PRD5 423 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 A0A1W2PRF3 423 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 A0A1W2PRM7 423 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 TNFSF8P32971 234 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 S100A5P33763 92 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 UBE2E1P51965 193 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 IL1F10Q8WWZ1 152 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 ZNF286AQ9HBT8 521 aa24.16■■□□□ 1.46
LIMCH1-211ENST00000509638 IGHV3-43A0A0B4J1X8 118 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 MEIS3P1A6NDR6 274 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 TRDCB7Z8K6 153 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 IGHV3-43DP0DP04 118 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 KIR2DS4P43632 304 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 KIR2DS1Q14954 304 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 LEAP2Q969E1 77 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 GALMQ96C23 342 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 ST6GALNAC5Q9BVH7 336 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 CLEC7AQ9BXN2 247 aa24.15■■□□□ 1.46
LIMCH1-211ENST00000509638 A0A087X0M5 115 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 A0A1B0GX30 115 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 MEIOCA2RUB1 952 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 SCTP09683 121 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 SRD5A1P18405 259 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 PRSS3P35030 304 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 LOXL3P58215 753 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 TMEM30BQ3MIR4 351 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 FAM53AQ6NSI3 398 aaPredicted RBP24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 GFOD1Q9NXC2 390 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 GNG12Q9UBI6 72 aa24.14■■□□□ 1.45
LIMCH1-211ENST00000509638 IGHV3-7P01780 117 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 Q6ZS49 121 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 ABHD12Q8N2K0 398 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 GVQW1Q8N7I0 195 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 OR10V1Q8NGI7 309 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 OR52M1Q8NGK5 317 aa24.13■■□□□ 1.45
LIMCH1-211ENST00000509638 IGKV1D-8A0A087WSZ0 117 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 FABP7O15540 132 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 CRLF1O75462 422 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 EPHA1P21709 976 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 CD34P28906 385 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 HTD2P86397 168 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 IL18Q14116 193 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 GNMTQ14749 295 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 SRSF7Q16629 238 aaKnown RBP eCLIP24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 OR11H6Q8NGC7 330 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 C22orf15Q8WYQ4 148 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 ABHD1Q96SE0 405 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 OCSTAMPQ9BR26 566 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 OR2S2Q9NQN1 319 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 ZNF69Q9UC07 566 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 CUBNO60494 3623 aa24.12■■□□□ 1.45
LIMCH1-211ENST00000509638 SETD2Q9BYW2 2564 aaPredicted RBP24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms