RNA–Protein interactions for RNA: YMR304W

UBP15, Transcript of Ubiquitin-specific protease involved in protein deubiquitination, yeast

Gene UBP15, Length 3,693 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP15	YMR304W	ATP3	P38077	311 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	2.6	□□□□□ -1.99	not detected
UBP15	YMR304W	ALD5	P40047	520 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	OSW7	P43611	510 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	NPA3	P47122	385 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	AIM24	P47127	394 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	DSD1	P53095	428 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	SXM1	Q04175	944 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	KRE28	Q04431	385 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	NSE1	Q07913	336 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	WRS1	Q12109	432 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	SCM3	Q12334	223 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	GPR1	Q12361	961 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	RVB2	Q12464	471 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	CLG1	P35190	452 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	TTI1	P36097	1038 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	TRZ1	P36159	838 aa	Predicted RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	SSN3	P39073	555 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	EPL1	P43572	832 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	ENP2	P48234	707 aa	Known RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	MAL13	P53338	473 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	RRP17	Q04031	235 aa	Predicted RBP	2.6	□□□□□ -1.99
UBP15	YMR304W	LCD1	Q04377	747 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	YML053C	Q04978	212 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	GIS3	Q12418	502 aa		2.6	□□□□□ -1.99
UBP15	YMR304W	SEC18	P18759	758 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	PYC2	P32327	1180 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	RPN2	P32565	945 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	PEX2	P32800	271 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	MNT3	P40549	630 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	YFL034W	P43564	1073 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	EAF7	P53911	425 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	ECM7	Q06200	448 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	ESC2	Q06340	456 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	CMS1	Q07897	291 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	SIL1	Q08199	421 aa		2.59	□□□□□ -1.99
UBP15	YMR304W	BRX1	Q08235	291 aa	Known RBP	2.59	□□□□□ -1.99
UBP15	YMR304W	SWI5	P08153	709 aa		2.59	□□□□□ -2
UBP15	YMR304W	FUS1	P11710	512 aa		2.59	□□□□□ -2
UBP15	YMR304W	SEC63	P14906	663 aa		2.59	□□□□□ -2
UBP15	YMR304W	PRP16	P15938	1071 aa	Predicted RBP	2.59	□□□□□ -2
UBP15	YMR304W	APA1	P16550	321 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected
UBP15	YMR304W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected
UBP15	YMR304W	PDB1	P32473	366 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	VPH1	P32563	840 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	DBP7	P36120	742 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	RCK2	P38623	610 aa		2.59	□□□□□ -2
UBP15	YMR304W	BCD1	P38772	366 aa		2.59	□□□□□ -2
UBP15	YMR304W	GPD2	P41911	440 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	TDA10	P42938	290 aa		2.59	□□□□□ -2
UBP15	YMR304W	JJJ2	P46997	583 aa		2.59	□□□□□ -2
UBP15	YMR304W	YGR054W	P53235	642 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	BIO5	P53744	561 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	GIM3	P53900	129 aa		2.59	□□□□□ -2
UBP15	YMR304W	YNL058C	P53947	316 aa		2.59	□□□□□ -2
UBP15	YMR304W	VAC7	P53950	1165 aa		2.59	□□□□□ -2
UBP15	YMR304W	LGE1	Q02796	332 aa	Known RBP	2.59	□□□□□ -2
UBP15	YMR304W	RSM10	Q03201	203 aa		2.59	□□□□□ -2
UBP15	YMR304W	FUS2	Q05670	677 aa		2.59	□□□□□ -2
UBP15	YMR304W	TMA10	Q06177	86 aa		2.59	□□□□□ -2
UBP15	YMR304W	GRC3	Q07845	632 aa		2.59	□□□□□ -2
UBP15	YMR304W	RRN6	P32786	894 aa		2.58	□□□□□ -2
UBP15	YMR304W	ARC19	P33204	171 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	MIA40	P36046	403 aa		2.58	□□□□□ -2
UBP15	YMR304W	TED1	P40533	473 aa		2.58	□□□□□ -2
UBP15	YMR304W	BNA3	P47039	444 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	FAR8	Q05040	523 aa		2.58	□□□□□ -2
UBP15	YMR304W	NOP6	Q07623	225 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	GLE1	Q12315	538 aa		2.58	□□□□□ -2
UBP15	YMR304W	TY1A-DR3	Q12441	440 aa		2.58	□□□□□ -2
UBP15	YMR304W	CET1	O13297	549 aa	Predicted RBP	2.58	□□□□□ -2
UBP15	YMR304W	ARD1	P07347	238 aa	Predicted RBP	2.58	□□□□□ -2
UBP15	YMR304W	RPC40	P07703	335 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	RPS6A	P0CX37	236 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	RPS6B	P0CX38	236 aa	Predicted RBP	2.58	□□□□□ -2
UBP15	YMR304W	PCK1	P10963	549 aa		2.58	□□□□□ -2
UBP15	YMR304W	KRS1	P15180	591 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	MRC1	P25588	1096 aa		2.58	□□□□□ -2
UBP15	YMR304W	BMH1	P29311	267 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	BCS1	P32839	456 aa		2.58	□□□□□ -2
UBP15	YMR304W	TGL1	P34163	548 aa		2.58	□□□□□ -2
UBP15	YMR304W	TGL4	P36165	910 aa		2.58	□□□□□ -2
UBP15	YMR304W	YBR238C	P38330	731 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	PCA1	P38360	1216 aa		2.58	□□□□□ -2
UBP15	YMR304W	RFC1	P38630	861 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	YPT35	P38815	214 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	AFG3	P39925	761 aa		2.58	□□□□□ -2
UBP15	YMR304W	VID27	P40157	782 aa		2.58	□□□□□ -2
UBP15	YMR304W	YTA6	P40328	754 aa		2.58	□□□□□ -2
UBP15	YMR304W	MOB1	P40484	314 aa		2.58	□□□□□ -2
UBP15	YMR304W	NEO1	P40527	1151 aa		2.58	□□□□□ -2
UBP15	YMR304W	MAD1	P40957	749 aa		2.58	□□□□□ -2
UBP15	YMR304W	GCN20	P43535	752 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	YGR266W	P53326	701 aa		2.58	□□□□□ -2
UBP15	YMR304W	NSG2	P53898	299 aa		2.58	□□□□□ -2
UBP15	YMR304W	SEC5	P89102	971 aa		2.58	□□□□□ -2
UBP15	YMR304W	MDM38	Q08179	573 aa		2.58	□□□□□ -2
UBP15	YMR304W	MSC6	Q08818	692 aa	Known RBP	2.58	□□□□□ -2
UBP15	YMR304W	YPR022C	Q12139	1133 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 31 ms