RNA–Protein interactions for RNA: YKL185W

ASH1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene ASH1, Length 1,767 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cellular bud, Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASH1	YKL185W	RAD16	P31244	790 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	RPC82	P32349	654 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	YEL1	P34225	687 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	KES1	P35844	434 aa	Known RBP	5.81	□□□□□ -1.48
ASH1	YKL185W	MMS21	P38632	267 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	END3	P39013	349 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	PSY2	P40164	858 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	JEM1	P40358	645 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	RSC8	P43609	557 aa	Known RBP	5.81	□□□□□ -1.48
ASH1	YKL185W	TAF6	P53040	516 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	SHE10	P53075	577 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	DRN1	P53255	507 aa	Known RBP	5.81	□□□□□ -1.48
ASH1	YKL185W	DIP5	P53388	608 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	ALD6	P54115	500 aa	Known RBP	5.81	□□□□□ -1.48
ASH1	YKL185W	RPM2	Q02773	1202 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	MTG1	Q03151	367 aa	Predicted RBP	5.81	□□□□□ -1.48
ASH1	YKL185W	PPM1	Q04081	328 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	CRF1	Q04930	467 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	DON1	Q05610	365 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	PUS5	Q06244	254 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	CIR2	Q08822	631 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	ARP6	Q12509	438 aa		5.81	□□□□□ -1.48
ASH1	YKL185W	ENO1	P00924	437 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	THS1	P04801	734 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	SUP45	P12385	437 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	YAK1	P14680	807 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	EFT1	P32324	842 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	CDC3	P32457	520 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	UGA4	P32837	571 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	PGM2	P37012	569 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	UBP13	P38187	747 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	AMN1	P38285	549 aa	Predicted RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	OAF1	P39720	1047 aa	Predicted RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	YER156C	P40093	338 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	PDS1	P40316	373 aa	Predicted RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	RNR4	P49723	345 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	VID30	P53076	958 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	USE1	P53146	245 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	NOP15	P53927	220 aa	Predicted RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	COG6	P53959	839 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	ASI1	P54074	624 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	OSH6	Q02201	448 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	ACL4	Q03771	387 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	YLR297W	Q05899	129 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	YSH1	Q06224	779 aa	Predicted RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.8	□□□□□ -1.48	not detected
ASH1	YKL185W	CMD1	P06787	147 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	SRD1	P09007	221 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	PCK1	P10963	549 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	MRPL25	P23369	157 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	PRP22	P24384	1145 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	CAP1	P28495	268 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	EUG1	P32474	517 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	PGM1	P33401	570 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	YKR078W	P36158	585 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	CCL1	P37366	393 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	NCL1	P38205	684 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	KEL1	P38853	1164 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	SHC1	P39000	512 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	RRD1	P40454	393 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	SET2	P46995	733 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	FMP33	P46998	180 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	YJL007C	P47080	104 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	RBL2	P48606	106 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	YGR016W	P53209	190 aa		5.8	□□□□□ -1.48
ASH1	YKL185W	WHI4	Q07655	649 aa	Known RBP	5.8	□□□□□ -1.48
ASH1	YKL185W	ADE3	P07245	946 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	GCR1	P07261	785 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	HEM15	P16622	393 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	VPH2	P32341	215 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	RIB7	P33312	244 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	TRM2	P33753	639 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	AST1	P35183	429 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	HES1	P35843	434 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	TRZ1	P36159	838 aa	Predicted RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	PAM1	P37304	830 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	PHO88	P38264	188 aa	Predicted RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	EXO5	P38289	585 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	SPC72	P39723	622 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	YRB1	P41920	201 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	FIG4	P42837	879 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	TAF1	P46677	1066 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	COS5	P47187	383 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	RPL22B	P56628	122 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	TRM44	Q02648	567 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	TDA5	Q06417	326 aa	Known RBP	5.79	□□□□□ -1.48
ASH1	YKL185W	NSE1	Q07913	336 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	VHS3	Q08438	674 aa		5.79	□□□□□ -1.48
ASH1	YKL185W	SWI6	P09959	803 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	AAD3	P25612	363 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	BIO2	P32451	375 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	SUV3	P32580	737 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	RRN6	P32786	894 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	PEX2	P32800	271 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	ALA1	P40825	983 aa	Known RBP	5.78	□□□□□ -1.48
ASH1	YKL185W	LCB2	P40970	561 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	TEL2	P53038	688 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	SOL4	P53315	255 aa		5.78	□□□□□ -1.48
ASH1	YKL185W	CNM67	P53865	581 aa	Known RBP	5.78	□□□□□ -1.48
ASH1	YKL185W	ESBP6	P53918	673 aa		5.78	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 64.6 ms