RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	OM45	P16547	393 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	KIP2	P28743	706 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	RAD16	P31244	790 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	ISF1	P32488	338 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	YKL091C	P33324	310 aa	Known RBP	5.21	□□□□□ -1.58
VPS29	YHR012W	YKR051W	P36142	418 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	ATG12	P38316	186 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	MED6	P38782	295 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	NUP60	P39705	539 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	RSM25	P40496	264 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	YJR054W	P47114	497 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	TOF2	Q02208	771 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	TSR1	Q07381	788 aa	Known RBP	5.21	□□□□□ -1.58
VPS29	YHR012W	IWR1	Q07532	353 aa	Predicted RBP	5.21	□□□□□ -1.58
VPS29	YHR012W	YPQ1	Q12010	308 aa		5.21	□□□□□ -1.58
VPS29	YHR012W	COX11	P19516	300 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	RNR1	P21524	888 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	PPH22	P23595	377 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	KIP1	P28742	1111 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	SAC6	P32599	642 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	YKT6	P36015	200 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	NOP4	P37838	685 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	SAH1	P39954	449 aa	Known RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	CHS6	P40955	746 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	NIS1	P53939	407 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	UBP2	Q01476	1272 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	MUB1	Q03162	620 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	MZM1	Q03429	123 aa	Predicted RBP	5.2	□□□□□ -1.58
VPS29	YHR012W	HER2	Q03557	464 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	YCG1	Q06680	1035 aa		5.2	□□□□□ -1.58
VPS29	YHR012W	RPL40A	P0CH08	128 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	RPL40B	P0CH09	128 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	SIR1	P21691	654 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	MRT4	P33201	236 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	AGP2	P38090	596 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	YBR225W	P38321	900 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	DSE1	P40077	573 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	YIL161W	P40449	235 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	ZAP1	P47043	880 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	MTD1	Q02046	320 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	GCN5	Q03330	439 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	CEF1	Q03654	590 aa	Predicted RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	COG4	Q06096	861 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	BSP1	Q06604	576 aa		5.19	□□□□□ -1.58
VPS29	YHR012W	ETT1	Q08421	412 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	ABP140	Q08641	628 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	ACC1	Q00955	2233 aa	Known RBP	5.19	□□□□□ -1.58
VPS29	YHR012W	TEL1	P38110	2787 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	SCJ1	P25303	377 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	LRE1	P25579	583 aa	Known RBP	5.18	□□□□□ -1.58
VPS29	YHR012W	MSH2	P25847	964 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	AVT2	P39981	480 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	YIR014W	P40570	242 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	FIG4	P42837	879 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	CIR1	P42940	261 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	TOS3	P43637	560 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	LSC2	P53312	427 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	YNL011C	P53980	444 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	SEG1	Q04279	960 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	TMN2	Q04562	672 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	CSR1	Q06705	408 aa	Known RBP	5.18	□□□□□ -1.58
VPS29	YHR012W	MSB2	P32334	1306 aa		5.18	□□□□□ -1.58
VPS29	YHR012W	BI4	P03879	638 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	FPR1	P20081	114 aa	Known RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	IME1	P21190	360 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	RRT12	P25381	491 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	PDC6	P26263	563 aa	Known RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	CBF2	P32504	956 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	HSP78	P33416	811 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	YBR056W	P38081	501 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	YMC2	P38087	329 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	SIF2	P38262	535 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	BCD1	P38772	366 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	FAA3	P39002	694 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	DOT6	P40059	670 aa	Known RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	OSW5	P40219	148 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	SBE2	P42223	864 aa	Known RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	GUF1	P46943	645 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	VTC4	P47075	721 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	HRQ1	Q05549	1077 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	ECM22	Q05958	814 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	SPP382	Q06411	708 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	ALR1	Q08269	859 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	NBP2	Q12163	236 aa		5.17	□□□□□ -1.58
VPS29	YHR012W	DDP1	Q99321	188 aa	Known RBP	5.17	□□□□□ -1.58
VPS29	YHR012W	KIN3	P22209	435 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	VBA3	P25594	458 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	DAL1	P32375	460 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	DSS4	P32601	143 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	ELM1	P32801	640 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	XRS2	P33301	854 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	VBA5	P36172	582 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	PCF11	P39081	626 aa	Predicted RBP	5.16	□□□□□ -1.58
VPS29	YHR012W	FHL1	P39521	936 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	HYR1	P40581	163 aa	Known RBP	5.16	□□□□□ -1.58
VPS29	YHR012W	MND1	P53102	219 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	DRN1	P53255	507 aa	Known RBP	5.16	□□□□□ -1.58
VPS29	YHR012W	COP1	P53622	1201 aa	Known RBP	5.16	□□□□□ -1.58
VPS29	YHR012W	YPL014W	Q02606	381 aa		5.16	□□□□□ -1.58
VPS29	YHR012W	CLU1	Q03690	1277 aa	Known RBP	5.16	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms