RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FAM9BQ8IZU0 186 aa14.38□□□□□ -0.11
VPS28-214ENST00000531032 ZNF594Q96JF6 807 aaPredicted RBP14.38□□□□□ -0.11
VPS28-214ENST00000531032 SRCIN1Q9C0H9 1055 aa14.38□□□□□ -0.11
VPS28-214ENST00000531032 C9orf78Q9NZ63 289 aaPredicted RBP14.38□□□□□ -0.11
VPS28-214ENST00000531032 TM4SF4P48230 202 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 PTPN12Q05209 780 aaKnown RBP14.37□□□□□ -0.11
VPS28-214ENST00000531032 TAF7LQ5H9L4 462 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 LDLRAD1Q5T700 205 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 SLC4A10Q6U841 1118 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 DEFB129Q9H1M3 183 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 CNNM1Q9NRU3 951 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 SSC5DA1L4H1 1573 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 UTYO14607 1347 aa14.37□□□□□ -0.11
VPS28-214ENST00000531032 ARAP2Q8WZ64 1704 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 CTU1Q7Z7A3 348 aaKnown RBP14.36□□□□□ -0.11
VPS28-214ENST00000531032 KAZALD1Q96I82 304 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 SUCLG2Q96I99 432 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 PPP2R3BQ9Y5P8 575 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 FAM205AQ6ZU69 1335 aa14.36□□□□□ -0.11
VPS28-214ENST00000531032 LAMB1P07942 1786 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 PLIN1O60240 522 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 PRKG1Q13976 671 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 UBE4AQ14139 1066 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 MAP3K11Q16584 847 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 CFAP100Q494V2 611 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 NOM1Q5C9Z4 860 aaKnown RBP14.35□□□□□ -0.11
VPS28-214ENST00000531032 ANGEL1Q9UNK9 670 aaKnown RBP14.35□□□□□ -0.11
VPS28-214ENST00000531032 PCDHAC2Q9Y5I4 1007 aa14.35□□□□□ -0.11
VPS28-214ENST00000531032 F8W031 263 aaPredicted RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 MYO1BO43795 1136 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 TBC1D8O95759 1140 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 NBPF7P0C2Y1 421 aaPredicted RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 SREBF2Q12772 1141 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 MKRN3Q13064 507 aaKnown RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 RABL6Q3YEC7 729 aaPredicted RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 SPRYD7Q5W111 196 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 TDRD7Q8NHU6 1098 aaKnown RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 ZNF296Q8WUU4 475 aaPredicted RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 PRMT6Q96LA8 375 aaPredicted RBP14.34□□□□□ -0.11
VPS28-214ENST00000531032 CFHR5Q9BXR6 569 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 JAG2Q9Y219 1238 aa14.34□□□□□ -0.11
VPS28-214ENST00000531032 CLRN2A0PK11 232 aa14.33□□□□□ -0.12
VPS28-214ENST00000531032 PUS3Q9BZE2 481 aaKnown RBP14.33□□□□□ -0.12
VPS28-214ENST00000531032 FZD1Q9UP38 647 aa14.33□□□□□ -0.12
VPS28-214ENST00000531032 RIPOR2Q9Y4F9 1068 aa14.33□□□□□ -0.12
VPS28-214ENST00000531032 AOX1Q06278 1338 aa14.33□□□□□ -0.12
VPS28-214ENST00000531032 UNCXA6NJT0 531 aa14.32□□□□□ -0.12
VPS28-214ENST00000531032 PPP1R12BO60237 982 aaPredicted RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 HIBADHP31937 336 aaKnown RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 GYG1P46976 350 aa14.32□□□□□ -0.12
VPS28-214ENST00000531032 PKN2Q16513 984 aaKnown RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 MFSD14BQ5SR56 506 aa14.32□□□□□ -0.12
VPS28-214ENST00000531032 MRPL50Q8N5N7 158 aaKnown RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 FAM84BQ96KN1 310 aaPredicted RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 BICC1Q9H694 974 aaKnown RBP14.32□□□□□ -0.12
VPS28-214ENST00000531032 PTPRCP08575 1304 aa14.32□□□□□ -0.12
VPS28-214ENST00000531032 MROH5Q6ZUA9 1318 aa14.32□□□□□ -0.12
VPS28-214ENST00000531032 TNRC18O15417 2968 aaPredicted RBP14.31□□□□□ -0.12
VPS28-214ENST00000531032 GPR25O00155 361 aa14.31□□□□□ -0.12
VPS28-214ENST00000531032 ZBTB48P10074 688 aaPredicted RBP14.31□□□□□ -0.12
VPS28-214ENST00000531032 SUPT20HL1Q3ZLR7 823 aa14.31□□□□□ -0.12
VPS28-214ENST00000531032 ANKRD44Q8N8A2 993 aa14.31□□□□□ -0.12
VPS28-214ENST00000531032 VEZTQ9HBM0 779 aa14.31□□□□□ -0.12
VPS28-214ENST00000531032 SERPINA10Q9UK55 444 aa14.31□□□□□ -0.12
VPS28-214ENST00000531032 MANSC4A6NHS7 340 aaPredicted RBP14.3□□□□□ -0.12
VPS28-214ENST00000531032 E9PSI1 815 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 ALDH1A1P00352 501 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 RBM5P52756 815 aaKnown RBP eCLIP14.3□□□□□ -0.12
VPS28-214ENST00000531032 RASA3Q14644 834 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 SPDYE2Q495Y8 402 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 NBPF12Q5TAG4 269 aaPredicted RBP14.3□□□□□ -0.12
VPS28-214ENST00000531032 VGLL2Q8N8G2 317 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 SLC10A4Q96EP9 437 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 CLMNQ96JQ2 1002 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 TTF2Q9UNY4 1162 aaKnown RBP14.3□□□□□ -0.12
VPS28-214ENST00000531032 HPS5Q9UPZ3 1129 aa14.3□□□□□ -0.12
VPS28-214ENST00000531032 OTOFQ9HC10 1997 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 SOX10P56693 466 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 INHBEP58166 350 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 TNFAIP1Q13829 316 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 LRRC24Q50LG9 513 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 FBXO33Q7Z6M2 555 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 WNK4Q96J92 1243 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 R3HDMLQ9H3Y0 253 aa14.29□□□□□ -0.12
VPS28-214ENST00000531032 ZNF70Q9UC06 446 aaPredicted RBP14.29□□□□□ -0.12
VPS28-214ENST00000531032 PDE8BO95263 885 aa14.28□□□□□ -0.12
VPS28-214ENST00000531032 IREB2P48200 963 aaKnown RBP14.28□□□□□ -0.12
VPS28-214ENST00000531032 IFNL1Q8IU54 200 aa14.28□□□□□ -0.12
VPS28-214ENST00000531032 DZIP1LQ8IYY4 767 aaKnown RBP14.28□□□□□ -0.12
VPS28-214ENST00000531032 SSH1Q8WYL5 1049 aa14.28□□□□□ -0.12
VPS28-214ENST00000531032 FKTNO75072 461 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 USP2O75604 605 aaPredicted RBP14.27□□□□□ -0.13
VPS28-214ENST00000531032 CRKP46108 304 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 SLFN5Q08AF3 891 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 METTL24Q5JXM2 366 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 VPS37DQ86XT2 251 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 ANKRD13AQ8IZ07 590 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 TEPSINQ96N21 525 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms