RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ARMC9Q7Z3E5 817 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 SAGE1Q9NXZ1 904 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 ZNF521Q96K83 1311 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 IRS2Q9Y4H2 1338 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 E9PSI1 815 aa16.38■□□□□ 0.21
CPSF1-204ENST00000529288 IL1R1P14778 569 aa16.38■□□□□ 0.21
CPSF1-204ENST00000529288 GYG1P46976 350 aa16.38■□□□□ 0.21
CPSF1-204ENST00000529288 BICC1Q9H694 974 aaKnown RBP16.38■□□□□ 0.21
CPSF1-204ENST00000529288 VEZTQ9HBM0 779 aa16.38■□□□□ 0.21
CPSF1-204ENST00000529288 ANGEL1Q9UNK9 670 aaKnown RBP16.38■□□□□ 0.21
CPSF1-204ENST00000529288 FZD1Q9UP38 647 aa16.38■□□□□ 0.21
CPSF1-204ENST00000529288 MYO1BO43795 1136 aa16.37■□□□□ 0.21
CPSF1-204ENST00000529288 HIBADHP31937 336 aaKnown RBP16.37■□□□□ 0.21
CPSF1-204ENST00000529288 PTPN12Q05209 780 aaKnown RBP16.37■□□□□ 0.21
CPSF1-204ENST00000529288 REM2Q8IYK8 340 aaPredicted RBP16.37■□□□□ 0.21
CPSF1-204ENST00000529288 SSH1Q8WYL5 1049 aa16.37■□□□□ 0.21
CPSF1-204ENST00000529288 KAZALD1Q96I82 304 aa16.37■□□□□ 0.21
CPSF1-204ENST00000529288 DEFB129Q9H1M3 183 aa16.37■□□□□ 0.21
CPSF1-204ENST00000529288 UBE4AQ14139 1066 aa16.36■□□□□ 0.21
CPSF1-204ENST00000529288 VPS37DQ86XT2 251 aa16.36■□□□□ 0.21
CPSF1-204ENST00000529288 ZBED3Q96IU2 234 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-204ENST00000529288 PRMT6Q96LA8 375 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-204ENST00000529288 PSME4Q14997 1843 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 FRAT2O75474 233 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-204ENST00000529288 TBC1D8O95759 1140 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 SLFN5Q08AF3 891 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 CHAF1AQ13111 956 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-204ENST00000529288 LRRC24Q50LG9 513 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 METTL24Q5JXM2 366 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 CDCA7LQ96GN5 454 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 IQSEC3Q9UPP2 1182 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-204ENST00000529288 PTPRCP08575 1304 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 PAPPA2Q9BXP8 1791 aa16.35■□□□□ 0.21
CPSF1-204ENST00000529288 FKBP1AP62942 108 aaKnown RBP16.34■□□□□ 0.21
CPSF1-204ENST00000529288 MFSD14BQ5SR56 506 aa16.34■□□□□ 0.21
CPSF1-204ENST00000529288 FAM84BQ96KN1 310 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-204ENST00000529288 SMC4Q9NTJ3 1288 aa16.34■□□□□ 0.21
CPSF1-204ENST00000529288 TTF2Q9UNY4 1162 aaKnown RBP16.34■□□□□ 0.21
CPSF1-204ENST00000529288 RIPOR2Q9Y4F9 1068 aa16.34■□□□□ 0.21
CPSF1-204ENST00000529288 MROH5Q6ZUA9 1318 aa16.34■□□□□ 0.21
CPSF1-204ENST00000529288 SPDYE2BA6NHP3 402 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 SPDYE6P0CI01 402 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 ANKRD44Q8N8A2 993 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 MTMR14Q8NCE2 650 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 TDRD7Q8NHU6 1098 aaKnown RBP16.33■□□□□ 0.2
CPSF1-204ENST00000529288 KLHDC4Q8TBB5 520 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 SLC10A4Q96EP9 437 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 UTYO14607 1347 aa16.33■□□□□ 0.2
CPSF1-204ENST00000529288 PPP1R12BO60237 982 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-204ENST00000529288 AOX1Q06278 1338 aa16.32■□□□□ 0.2
CPSF1-204ENST00000529288 SUPT20HL1Q3ZLR7 823 aa16.32■□□□□ 0.2
CPSF1-204ENST00000529288 CAVIN4Q5BKX8 364 aa16.32■□□□□ 0.2
CPSF1-204ENST00000529288 FAM205AQ6ZU69 1335 aa16.32■□□□□ 0.2
CPSF1-204ENST00000529288 CASP8AP2Q9UKL3 1982 aa16.32■□□□□ 0.2
CPSF1-204ENST00000529288 CACNA1FO60840 1977 aa16.31■□□□□ 0.2
CPSF1-204ENST00000529288 MLLT1Q03111 559 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-204ENST00000529288 SREBF2Q12772 1141 aa16.31■□□□□ 0.2
CPSF1-204ENST00000529288 RASA3Q14644 834 aa16.31■□□□□ 0.2
CPSF1-204ENST00000529288 RABL6Q3YEC7 729 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-204ENST00000529288 NBPF12Q5TAG4 269 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-204ENST00000529288 USP44Q9H0E7 712 aa16.31■□□□□ 0.2
CPSF1-204ENST00000529288 TDRD3Q9H7E2 651 aaKnown RBP16.31■□□□□ 0.2
CPSF1-204ENST00000529288 PPP2R3BQ9Y5P8 575 aa16.31■□□□□ 0.2
CPSF1-204ENST00000529288 TM4SF4P48230 202 aa16.3■□□□□ 0.2
CPSF1-204ENST00000529288 LDLRAD1Q5T700 205 aa16.3■□□□□ 0.2
CPSF1-204ENST00000529288 SPRYD7Q5W111 196 aa16.3■□□□□ 0.2
CPSF1-204ENST00000529288 CTU1Q7Z7A3 348 aaKnown RBP16.3■□□□□ 0.2
CPSF1-204ENST00000529288 CLMNQ96JQ2 1002 aa16.3■□□□□ 0.2
CPSF1-204ENST00000529288 ZNF70Q9UC06 446 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-204ENST00000529288 TCP10L2B9ZVM9 353 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 PDE8BO95263 885 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 CRKP46108 304 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 BCAMP50895 628 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 ALDH1L2Q3SY69 923 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 FBXO33Q7Z6M2 555 aa16.29■□□□□ 0.2
CPSF1-204ENST00000529288 ZNF296Q8WUU4 475 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-204ENST00000529288 ZNF646O15015 1829 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-204ENST00000529288 IREB2P48200 963 aaKnown RBP16.28■□□□□ 0.2
CPSF1-204ENST00000529288 GRIK5Q16478 980 aa16.28■□□□□ 0.2
CPSF1-204ENST00000529288 DZIP1LQ8IYY4 767 aaKnown RBP16.28■□□□□ 0.2
CPSF1-204ENST00000529288 SERPINA10Q9UK55 444 aa16.28■□□□□ 0.2
CPSF1-204ENST00000529288 NOB1Q9ULX3 412 aaKnown RBP16.28■□□□□ 0.2
CPSF1-204ENST00000529288 COL1A1P02452 1464 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-204ENST00000529288 GPR25O00155 361 aa16.27■□□□□ 0.2
CPSF1-204ENST00000529288 USP2O75604 605 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-204ENST00000529288 IFIT1P09914 478 aaKnown RBP16.27■□□□□ 0.2
CPSF1-204ENST00000529288 SOX10P56693 466 aa16.27■□□□□ 0.2
CPSF1-204ENST00000529288 TNFAIP1Q13829 316 aa16.27■□□□□ 0.2
CPSF1-204ENST00000529288 SPDYE2Q495Y8 402 aa16.27■□□□□ 0.2
CPSF1-204ENST00000529288 WNK4Q96J92 1243 aa16.27■□□□□ 0.2
CPSF1-204ENST00000529288 MANSC4A6NHS7 340 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-204ENST00000529288 UBTFL1P0CB47 393 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-204ENST00000529288 TNNI2P48788 182 aa16.26■□□□□ 0.19
CPSF1-204ENST00000529288 PUM3Q15397 648 aaKnown RBP16.26■□□□□ 0.19
CPSF1-204ENST00000529288 TBC1D22AQ8WUA7 517 aa16.26■□□□□ 0.19
CPSF1-204ENST00000529288 SIL1Q9H173 461 aa16.26■□□□□ 0.19
CPSF1-204ENST00000529288 EYA2O00167 538 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 SLC5A1P13866 664 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 CACNB3P54284 484 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms