RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 FOXD3Q9UJU5 478 aaPredicted RBP7.31□□□□□ -1.24
CLK1-202ENST00000409403 DCDC2BA2VCK2 349 aa7.3□□□□□ -1.24
CLK1-202ENST00000409403 KHNYNO15037 678 aaKnown RBP7.3□□□□□ -1.24
CLK1-202ENST00000409403 UBAP2LQ14157 1087 aaKnown RBP7.3□□□□□ -1.24
CLK1-202ENST00000409403 R3HDM1Q15032 1099 aaKnown RBP7.3□□□□□ -1.24
CLK1-202ENST00000409403 DBN1Q16643 649 aa7.3□□□□□ -1.24
CLK1-202ENST00000409403 GMCL1Q96IK5 515 aa7.3□□□□□ -1.24
CLK1-202ENST00000409403 TMEM63CQ9P1W3 806 aa7.3□□□□□ -1.24
CLK1-202ENST00000409403 MAST1Q9Y2H9 1570 aa7.3□□□□□ -1.24
CLK1-202ENST00000409403 PHACTR2O75167 634 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 PRELPP51888 382 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 TNP2Q05952 138 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 SFSWAPQ12872 951 aaKnown RBP7.29□□□□□ -1.24
CLK1-202ENST00000409403 LAMC2Q13753 1193 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 NLRP13Q86W25 1043 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 CUEDC1Q9NWM3 386 aaPredicted RBP7.29□□□□□ -1.24
CLK1-202ENST00000409403 SPHKAPQ2M3C7 1700 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 UBR1Q8IWV7 1749 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 SAMD9Q5K651 1589 aa7.29□□□□□ -1.24
CLK1-202ENST00000409403 PLEKHD1A6NEE1 506 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 MAPTP10636 758 aaKnown RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 ITGA6P23229 1130 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 PSMD2Q13200 908 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 MRPL58Q14197 206 aaKnown RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 TMC4Q7Z404 712 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 CFHR5Q9BXR6 569 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 MRS2Q9HD23 443 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 ABI2Q9NYB9 513 aaPredicted RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 PRDM15P57071 1507 aaPredicted RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 C11orf95C9JLR9 678 aaPredicted RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 DAB2P98082 770 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 CCINQ13939 588 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 ZNF837Q96EG3 531 aaPredicted RBP7.28□□□□□ -1.24
CLK1-202ENST00000409403 PKNOX2Q96KN3 472 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 FAM161BQ96MY7 647 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 ZFYVE28Q9HCC9 887 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 IGSF5Q9NSI5 407 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 NDFIP2Q9NV92 336 aa7.28□□□□□ -1.24
CLK1-202ENST00000409403 NLRP1Q9C000 1473 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 BNIP3LO60238 219 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 SORBS3O60504 671 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 RECKO95980 971 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 SNRPBP14678 240 aaKnown RBP7.27□□□□□ -1.25
CLK1-202ENST00000409403 GNA15P30679 374 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 COL13A1Q5TAT6 717 aaPredicted RBP7.27□□□□□ -1.25
CLK1-202ENST00000409403 TTC39BQ5VTQ0 682 aaPredicted RBP7.27□□□□□ -1.25
CLK1-202ENST00000409403 EFCAB2Q5VUJ9 269 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 THEMISQ8N1K5 641 aaPredicted RBP7.27□□□□□ -1.25
CLK1-202ENST00000409403 GSX2Q9BZM3 304 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 RNF19AQ9NV58 838 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 MARK1Q9P0L2 795 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 USP35Q9P2H5 1018 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 ATRNO75882 1429 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 SAMD9LQ8IVG5 1584 aa7.27□□□□□ -1.25
CLK1-202ENST00000409403 PZPP20742 1482 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 DHX57Q6P158 1386 aaKnown RBP7.26□□□□□ -1.25
CLK1-202ENST00000409403 SASH3O75995 380 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 TCF3P15923 654 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 TSNAXIP1Q2TAA8 658 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 USPL1Q5W0Q7 1092 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 PMEPA1Q969W9 287 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 CCDC74AQ96AQ1 378 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 ABHD17AQ96GS6 310 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 FRMD6Q96NE9 622 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 STRN4Q9NRL3 753 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 ATXN7L1Q9ULK2 861 aaPredicted RBP7.26□□□□□ -1.25
CLK1-202ENST00000409403 MSH6P52701 1360 aa7.26□□□□□ -1.25
CLK1-202ENST00000409403 KRT25Q7Z3Z0 450 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 C1orf127Q8N9H9 656 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 GTPBP3Q969Y2 492 aaKnown RBP7.25□□□□□ -1.25
CLK1-202ENST00000409403 EFCC1Q9HA90 598 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 CNTN3Q9P232 1028 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 SPG7Q9UQ90 795 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 SHANK3Q9BYB0 1731 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 ABCC3O15438 1527 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 TARSP26639 723 aaKnown RBP7.25□□□□□ -1.25
CLK1-202ENST00000409403 ANP32AP39687 249 aaKnown RBP7.25□□□□□ -1.25
CLK1-202ENST00000409403 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.25□□□□□ -1.25
CLK1-202ENST00000409403 PNMA5Q96PV4 448 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 BACH2Q9BYV9 841 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 CHRDQ9H2X0 955 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 NLRP2Q9NX02 1062 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 PPP4R2Q9NY27 417 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 VTI1BQ9UEU0 232 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 PHF24Q9UPV7 400 aa7.25□□□□□ -1.25
CLK1-202ENST00000409403 NINLQ9Y2I6 1382 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 INO80Q9ULG1 1556 aaPredicted RBP7.24□□□□□ -1.25
CLK1-202ENST00000409403 EREGO14944 169 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 RARAP10276 462 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 CES1P23141 567 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 SPEM2Q0P670 501 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 GGT6Q6P531 493 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 HCN2Q9UL51 889 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 PREX2Q70Z35 1606 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 RGPD1P0DJD0 1748 aa7.24□□□□□ -1.25
CLK1-202ENST00000409403 TNS1Q9HBL0 1735 aaKnown RBP7.24□□□□□ -1.25
CLK1-202ENST00000409403 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.24□□□□□ -1.25
CLK1-202ENST00000409403 MMP20O60882 483 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 PPFIA3O75145 1194 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 POLR3DP05423 398 aaPredicted RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms