RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	PEX14	P53112	341 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	PEX8	P53248	589 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	ARG5,6	Q01217	863 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	LEE1	Q02799	301 aa	Known RBP	4.13	□□□□□ -1.75
SEC4	YFL005W	NRG1	Q03125	231 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	TRM13	Q12383	476 aa		4.13	□□□□□ -1.75
SEC4	YFL005W	RPS21B	Q3E754	87 aa	Known RBP	4.13	□□□□□ -1.75
SEC4	YFL005W	SWI6	P09959	803 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	RPS21A	P0C0V8	87 aa	Known RBP	4.12	□□□□□ -1.75
SEC4	YFL005W	ADE2	P21264	571 aa	Known RBP	4.12	□□□□□ -1.75
SEC4	YFL005W	SEC65	P29478	273 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	OAF3	P36023	863 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	APT2	P36973	181 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	YHR202W	P38887	602 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	NUG1	P40010	520 aa	Known RBP	4.12	□□□□□ -1.75
SEC4	YFL005W	REC102	Q02721	264 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	SKY1	Q03656	742 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	MCM21	Q06675	368 aa		4.12	□□□□□ -1.75
SEC4	YFL005W	TMA7	Q3E764	64 aa	Known RBP	4.12	□□□□□ -1.75
SEC4	YFL005W	TRP4	P07285	380 aa	Predicted RBP	4.11	□□□□□ -1.75
SEC4	YFL005W	PLC1	P32383	869 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	DAL3	P32459	195 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	TRZ1	P36159	838 aa	Predicted RBP	4.11	□□□□□ -1.75
SEC4	YFL005W	BIT2	P38346	545 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	QRI1	P43123	477 aa	Known RBP	4.11	□□□□□ -1.75
SEC4	YFL005W	YJR008W	P47085	338 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	YLR407W	Q06070	228 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	ATG11	Q12527	1178 aa		4.11	□□□□□ -1.75
SEC4	YFL005W	TFC4	P33339	1025 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	FAT1	P38225	669 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	YHR112C	P38716	378 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	EMP65	P40085	556 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	FKH2	P41813	862 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	SLD3	P53135	668 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	SPC105	P53148	917 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	TEX1	P53851	422 aa	Known RBP	4.1	□□□□□ -1.75
SEC4	YFL005W	YMR210W	Q03649	449 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	TMN2	Q04562	672 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	GAD1	Q04792	585 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	ISA1	Q07821	250 aa	Predicted RBP	4.1	□□□□□ -1.75
SEC4	YFL005W	TGL5	Q12043	749 aa		4.1	□□□□□ -1.75
SEC4	YFL005W	PYC1	P11154	1178 aa	Known RBP	4.09	□□□□□ -1.75
SEC4	YFL005W	HEM12	P32347	362 aa	Predicted RBP	4.09	□□□□□ -1.75
SEC4	YFL005W	YKU70	P32807	602 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	AMA1	P50082	593 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	NOP15	P53927	220 aa	Predicted RBP	4.09	□□□□□ -1.75
SEC4	YFL005W	HMO1	Q03973	246 aa	Known RBP	4.09	□□□□□ -1.75
SEC4	YFL005W	SND1	Q04007	877 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	DLT1	Q04216	342 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	VHS3	Q08438	674 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	YPR027C	Q12079	277 aa		4.09	□□□□□ -1.75
SEC4	YFL005W	MET3	P08536	511 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	KAR1	P11927	433 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	LAT1	P12695	482 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	COX11	P19516	300 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	IMG2	P25642	146 aa	Predicted RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	EFT1	P32324	842 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	CUE2	P36075	443 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	YIR042C	P40586	236 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	RNR4	P49723	345 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	TGL2	P54857	326 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	LGE1	Q02796	332 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	CTK1	Q03957	528 aa	Known RBP	4.08	□□□□□ -1.76
SEC4	YFL005W	YOL057W	Q08225	711 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	YOL073C	Q08232	322 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	SLX4	Q12098	748 aa		4.08	□□□□□ -1.76
SEC4	YFL005W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
SEC4	YFL005W	RPS17A	P02407	136 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	CAF20	P12962	161 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	RPS17B	P14127	136 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	FRS1	P15624	595 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	RNR1	P21524	888 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	PET127	P32606	800 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	SER1	P33330	395 aa	Known RBP	4.07	□□□□□ -1.76
SEC4	YFL005W	PEA2	P40091	420 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	BAP3	P41815	604 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	ATG36	P46983	293 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	MUP1	P50276	574 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	YLR040C	Q07988	224 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	SGO1	Q08490	590 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	MCH5	Q08777	521 aa		4.07	□□□□□ -1.76
SEC4	YFL005W	GLN4	P13188	809 aa	Known RBP	4.06	□□□□□ -1.76
SEC4	YFL005W	ERG6	P25087	383 aa	Known RBP	4.06	□□□□□ -1.76
SEC4	YFL005W	YPT7	P32939	208 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	KTR4	P38131	464 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	YBR053C	P38235	358 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	SUL1	P38359	859 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	DUN1	P39009	513 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	ELO3	P40319	345 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	VID28	P40547	921 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	IES1	P43579	692 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	NOP9	P47077	666 aa	Known RBP	4.06	□□□□□ -1.76
SEC4	YFL005W	ENP2	P48234	707 aa	Known RBP	4.06	□□□□□ -1.76
SEC4	YFL005W	COX18	P53239	316 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	RTS3	P53289	263 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	YNL034W	P53963	612 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	YNL018C	P53976	612 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	PHM6	Q05637	104 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	YPS7	Q06325	596 aa		4.06	□□□□□ -1.76
SEC4	YFL005W	IRC10	Q08118	586 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms