RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MYL6BP14649 208 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 CRKLP46109 303 aaKnown RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 EIF5P55010 431 aaKnown RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 ERICH6BQ5W0A0 696 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 KSR2Q6VAB6 950 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 NPM2Q86SE8 214 aaKnown RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 RETREG3Q86VR2 466 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 DZIP1LQ8IYY4 767 aaKnown RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 SPSB2Q99619 263 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 USB1Q9BQ65 265 aaKnown RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 CICQ96RK0 1608 aaPredicted RBP9.37□□□□□ -0.91
CD44-228ENST00000528455 CNTNAP4Q9C0A0 1308 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 C5P01031 1676 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 A0A087WZG4 1122 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 CFAP99D6REC4 459 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 TRIM27P14373 513 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 CANXP27824 592 aaKnown RBP9.36□□□□□ -0.91
CD44-228ENST00000528455 RFC5P40937 340 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 KCNC4Q03721 635 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 FKBP5Q13451 457 aaPredicted RBP9.36□□□□□ -0.91
CD44-228ENST00000528455 AAMPQ13685 434 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 PROSER3Q2NL68 480 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 FAM160A2Q8N612 972 aaPredicted RBP9.36□□□□□ -0.91
CD44-228ENST00000528455 PLBD2Q8NHP8 589 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 NKX2-3Q8TAU0 364 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 CHMP4BQ9H444 224 aaKnown RBP9.36□□□□□ -0.91
CD44-228ENST00000528455 LAMB4A4D0S4 1761 aa9.36□□□□□ -0.91
CD44-228ENST00000528455 TAF1LQ8IZX4 1826 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 MYH14Q7Z406 1995 aaKnown RBP9.35□□□□□ -0.91
CD44-228ENST00000528455 PI4KAP2A4QPH2 592 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 ERVV-1B6SEH8 477 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 ADH1BP00325 375 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 NEFLP07196 543 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 SSFA2P28290 1259 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 INTS3Q68E01 1043 aaKnown RBP9.35□□□□□ -0.91
CD44-228ENST00000528455 PI4KAP1Q8N8J0 262 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 LINC00116Q8NCU8 138 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 PRR7Q8TB68 274 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 XAGE3Q8WTP9 111 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 TUBGCP6Q96RT7 1819 aa9.35□□□□□ -0.91
CD44-228ENST00000528455 C4BP0C0L5 1744 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 COL5A3P25940 1745 aaPredicted RBP9.34□□□□□ -0.91
CD44-228ENST00000528455 TJP1Q07157 1748 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 ANXA1P04083 346 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 CCT4P50991 539 aaKnown RBP9.34□□□□□ -0.91
CD44-228ENST00000528455 AIMP1Q12904 312 aaKnown RBP9.34□□□□□ -0.91
CD44-228ENST00000528455 MSS51Q4VC12 460 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 DNAAF4Q8WXU2 420 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 ZBTB1Q9Y2K1 713 aa9.34□□□□□ -0.91
CD44-228ENST00000528455 RTCBQ9Y3I0 505 aaKnown RBP9.34□□□□□ -0.91
CD44-228ENST00000528455 ZBTB7BO15156 539 aaPredicted RBP9.33□□□□□ -0.92
CD44-228ENST00000528455 TRIM28Q13263 835 aaKnown RBP9.33□□□□□ -0.92
CD44-228ENST00000528455 TRAPPC3LQ5T215 181 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 MSL1Q68DK7 614 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 CLEC4GQ6UXB4 293 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 FTSJ3Q8IY81 847 aaKnown RBP9.33□□□□□ -0.92
CD44-228ENST00000528455 CLUAP1Q96AJ1 413 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 METTL22Q9BUU2 404 aaPredicted RBP9.33□□□□□ -0.92
CD44-228ENST00000528455 MAP3K2Q9Y2U5 619 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 GTF3C3Q9Y5Q9 886 aa9.33□□□□□ -0.92
CD44-228ENST00000528455 IBTKQ9P2D0 1353 aaPredicted RBP9.33□□□□□ -0.92
CD44-228ENST00000528455 ABCC4O15439 1325 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 COL24A1Q17RW2 1714 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 ALDH1L1O75891 902 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 YY1P25490 414 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 PIP4K2AP48426 406 aaPredicted RBP9.32□□□□□ -0.92
CD44-228ENST00000528455 NEXNQ0ZGT2 675 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 TCIRG1Q13488 830 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 MVPQ14764 893 aaKnown RBP9.32□□□□□ -0.92
CD44-228ENST00000528455 HSP90AB3PQ58FF7 597 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 BEND3Q5T5X7 828 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 C20orf194Q5TEA3 1177 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 KIF6Q6ZMV9 814 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 TTLL7Q6ZT98 887 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 DZIP3Q86Y13 1208 aaKnown RBP9.32□□□□□ -0.92
CD44-228ENST00000528455 LINS1Q8NG48 757 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 PANK1Q8TE04 598 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 DDX19BQ9UMR2 479 aa9.32□□□□□ -0.92
CD44-228ENST00000528455 MAP3K15Q6ZN16 1313 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 F6X3S4 739 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 RLBP1P12271 317 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 GPR162Q16538 588 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 TMEM259Q4ZIN3 620 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 DESI1Q6ICB0 168 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 SLC4A10Q6U841 1118 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 AMIGO3Q86WK7 504 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 TMEM57Q8N5G2 664 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 SRCIN1Q9C0H9 1055 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 PRDM9Q9NQV7 894 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 PLSCR2Q9NRY7 297 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 NARFQ9UHQ1 456 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 TBC1D2BQ9UPU7 963 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 HDAC5Q9UQL6 1122 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 COG6Q9Y2V7 657 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 UBR3Q6ZT12 1888 aa9.31□□□□□ -0.92
CD44-228ENST00000528455 UTRNP46939 3433 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 ADCY9O60503 1353 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 RFC4P35249 363 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 MMP16P51512 607 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 SMIM5Q71RC9 77 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms