RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CT47B1P0C2W7 299 aaPredicted RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 HOXB1P14653 301 aaPredicted RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 CLK2P49760 499 aaKnown RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 DIXDC1Q155Q3 683 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 PROSER3Q2NL68 480 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 HDGFL1Q5TGJ6 251 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 CCDC30Q5VVM6 783 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 NUDT18Q6ZVK8 323 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 DZIP3Q86Y13 1208 aaKnown RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 TSR2Q969E8 191 aaKnown RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 TRPM7Q96QT4 1865 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 HYPKQ9NX55 129 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 SRP68Q9UHB9 627 aaKnown RBP8.67□□□□□ -1.02
VPS52-219ENST00000493379 TBC1D2BQ9UPU7 963 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 SPTBN5Q9NRC6 3674 aaKnown RBP8.66□□□□□ -1.02
VPS52-219ENST00000493379 MAP3K15Q6ZN16 1313 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 SNPHO15079 494 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 EIF2S2P20042 333 aaKnown RBP8.66□□□□□ -1.02
VPS52-219ENST00000493379 TRIM28Q13263 835 aaKnown RBP8.66□□□□□ -1.02
VPS52-219ENST00000493379 NFIXQ14938 502 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 TWISTNBQ3B726 338 aaPredicted RBP8.66□□□□□ -1.02
VPS52-219ENST00000493379 CST9Q5W186 159 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 COPS6Q7L5N1 327 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 ZNF34Q8IZ26 560 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 PRDM6Q9NQX0 595 aa8.66□□□□□ -1.02
VPS52-219ENST00000493379 SALL2Q9Y467 1007 aaPredicted RBP8.66□□□□□ -1.02
VPS52-219ENST00000493379 KLRG2A4D1S0 409 aaPredicted RBP8.65□□□□□ -1.02
VPS52-219ENST00000493379 A6NJR5 290 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 TRIM6-TRIM34B2RNG4 842 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 TRAF5O00463 557 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 CD46P15529 392 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 PIP4K2AP48426 406 aaPredicted RBP8.65□□□□□ -1.02
VPS52-219ENST00000493379 EXOSC9Q06265 439 aaKnown RBP8.65□□□□□ -1.02
VPS52-219ENST00000493379 DDR1Q08345 913 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 TTLL7Q6ZT98 887 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 ANKRD13DQ6ZTN6 518 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 CTU1Q7Z7A3 348 aaKnown RBP8.65□□□□□ -1.02
VPS52-219ENST00000493379 CLUAP1Q96AJ1 413 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 C1orf115Q9H7X2 142 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 CHPF2Q9P2E5 772 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 TLL2Q9Y6L7 1015 aa8.65□□□□□ -1.02
VPS52-219ENST00000493379 ZBED9Q6R2W3 1325 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 IQCA1LA6NCM1 817 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 ELL2O00472 640 aaPredicted RBP8.64□□□□□ -1.03
VPS52-219ENST00000493379 DNAJB2P25686 324 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 TCIRG1Q13488 830 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 HLFQ16534 295 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 TBC1D9BQ66K14 1250 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 NPM2Q86SE8 214 aaKnown RBP8.64□□□□□ -1.03
VPS52-219ENST00000493379 PLBD2Q8NHP8 589 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 XAGE3Q8WTP9 111 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 SPIRE2Q8WWL2 714 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 TATDN2Q93075 761 aa8.64□□□□□ -1.03
VPS52-219ENST00000493379 LAMB4A4D0S4 1761 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 SERPINB2P05120 415 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 MYL6BP14649 208 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 EPHX2P34913 555 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 SLC10A5Q5PT55 438 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 PACS2Q86VP3 889 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 SULF1Q8IWU6 871 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 OTUD5Q96G74 571 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 ISCA1Q9BUE6 129 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 TMEM134Q9H6X4 195 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 PNMA3Q9UL41 463 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 PDZRN3Q9UPQ7 1066 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 ZNF652Q9Y2D9 606 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 FER1L6Q2WGJ9 1857 aa8.63□□□□□ -1.03
VPS52-219ENST00000493379 IBTKQ9P2D0 1353 aaPredicted RBP8.62□□□□□ -1.03
VPS52-219ENST00000493379 ANXA1P04083 346 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 ALDH1L2Q3SY69 923 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 HSP90AB3PQ58FF7 597 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 SETDB2Q96T68 719 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 BRIP1Q9BX63 1249 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 PHAXQ9H814 394 aaKnown RBP8.62□□□□□ -1.03
VPS52-219ENST00000493379 LIMD1Q9UGP4 676 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 DLEC1Q9Y238 1755 aa8.62□□□□□ -1.03
VPS52-219ENST00000493379 KIAA0100Q14667 2235 aaKnown RBP8.62□□□□□ -1.03
VPS52-219ENST00000493379 CARMIL3Q8ND23 1372 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 PAPPA2Q9BXP8 1791 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 RNF123Q5XPI4 1314 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 NRXN2Q9P2S2 1712 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 DDX11L8A8MPP1 907 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 APBB1O00213 710 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 HNRNPUQ00839 825 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS52-219ENST00000493379 PROX2Q3B8N5 592 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 PARP10Q53GL7 1025 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 KSR2Q6VAB6 950 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 TPTE2Q6XPS3 522 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 KIF6Q6ZMV9 814 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 RIC3Q7Z5B4 369 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 NECTIN2Q92692 538 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 STK31Q9BXU1 1019 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 HACL1Q9UJ83 578 aa8.61□□□□□ -1.03
VPS52-219ENST00000493379 UBN2Q6ZU65 1347 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 ZNF541Q9H0D2 1346 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 TRAK2O60296 914 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 TRPA1O75762 1119 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 PLA2G5P39877 138 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 RFC5P40937 340 aa8.6□□□□□ -1.03
VPS52-219ENST00000493379 SUSD4Q5VX71 490 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms