RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ANO2Q9NQ90 1003 aa11.42□□□□□ -0.58
HDAC3-205ENST00000469550 ATP6V1DQ9Y5K8 247 aa11.42□□□□□ -0.58
HDAC3-205ENST00000469550 SNED1Q8TER0 1413 aa11.42□□□□□ -0.58
HDAC3-205ENST00000469550 NPHP1O15259 732 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 SLC4A2P04920 1241 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 PIP4K2AP48426 406 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-205ENST00000469550 CCDC93Q567U6 631 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 TPTE2Q6XPS3 522 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 KIAA1524Q8TCG1 905 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 ADAMTSL1Q8N6G6 1762 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 ERVV-1B6SEH8 477 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 KIF20AO95235 890 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 GNAI3P08754 354 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 ZSCAN22P10073 491 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-205ENST00000469550 ATP8B2P98198 1209 aa11.41□□□□□ -0.58
HDAC3-205ENST00000469550 L3MBTL3Q96JM7 780 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-205ENST00000469550 TTC12Q9H892 705 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-205ENST00000469550 NIP7Q9Y221 180 aaKnown RBP eCLIP11.41□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF830Q96NB3 372 aaPredicted RBP11.4□□□□□ -0.58
HDAC3-205ENST00000469550 ZNF219Q9P2Y4 722 aaPredicted RBP11.4□□□□□ -0.58
HDAC3-205ENST00000469550 HCLS1P14317 486 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 FKBP4Q02790 459 aaKnown RBP eCLIP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 GDPD2Q9HCC8 539 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 GOLGA6L6A8MZA4 724 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 CTIFO43310 598 aaKnown RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 PDIA4P13667 645 aaKnown RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 EIF4A1P60842 406 aaKnown RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 CHAF1AQ13111 956 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-205ENST00000469550 HLFQ16534 295 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 CRY2Q49AN0 593 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 CHADLQ6NUI6 762 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 ANKRD7Q92527 254 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 EXOC6BQ9Y2D4 811 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 MAP3K15Q6ZN16 1313 aa11.39□□□□□ -0.59
HDAC3-205ENST00000469550 IQCA1LA6NCM1 817 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 TRIM6-TRIM34B2RNG4 842 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 SYCP1Q15431 976 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 PPP4R3BQ5MIZ7 849 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 RTKN2Q8IZC4 609 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 RILPL2Q969X0 211 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 TTC14Q96N46 770 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 UPF3BQ9BZI7 483 aaKnown RBP11.38□□□□□ -0.59
HDAC3-205ENST00000469550 NYXQ9GZU5 481 aa11.38□□□□□ -0.59
HDAC3-205ENST00000469550 STX6O43752 255 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 DDNO94850 711 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-205ENST00000469550 F13A1P00488 732 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 ALDH1B1P30837 517 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 FEZ1Q99689 392 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 LIMCH1Q9UPQ0 1083 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 CNPY2Q9Y2B0 182 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 RAD50Q92878 1312 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 ABCC12Q96J65 1359 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 ANKRD36CQ5JPF3 1778 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 SYT1P21579 422 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 CC2D2BQ6DHV5 1058 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 PDCL2Q8N4E4 241 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 PRDM10Q9NQV6 1147 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 CREBZFQ9NS37 354 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 MIS18AQ9NYP9 233 aa11.37□□□□□ -0.59
HDAC3-205ENST00000469550 HOXA10P31260 410 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-205ENST00000469550 ATP2B3Q16720 1220 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 NOL8Q76FK4 1167 aaKnown RBP11.36□□□□□ -0.59
HDAC3-205ENST00000469550 G2E3Q7L622 706 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 LDHDQ86WU2 507 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 PSMD1Q99460 953 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 PASKQ96RG2 1323 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 SGSM2O43147 1006 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 RAB11FIP3O75154 756 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 GRIPAP1Q4V328 841 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 SLC4A10Q6U841 1118 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 TSC1Q92574 1164 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 ARID3AQ99856 593 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 KCNF1Q9H3M0 494 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 TAF1DQ9H5J8 278 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-205ENST00000469550 BABAM1Q9NWV8 329 aa11.36□□□□□ -0.59
HDAC3-205ENST00000469550 UBN2Q6ZU65 1347 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 ZNF541Q9H0D2 1346 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 FZD9O00144 591 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 RIOK3O14730 519 aaKnown RBP11.35□□□□□ -0.59
HDAC3-205ENST00000469550 CCDC192P0DO97 292 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 IARSP41252 1262 aaKnown RBP11.35□□□□□ -0.59
HDAC3-205ENST00000469550 CBX1P83916 185 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 TSHZ3Q63HK5 1081 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 KIF6Q6ZMV9 814 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 ZNF34Q8IZ26 560 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 C17orf53Q8N3J3 647 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-205ENST00000469550 JARID2Q92833 1246 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-205ENST00000469550 SMC3Q9UQE7 1217 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 SNX14Q9Y5W7 946 aa11.35□□□□□ -0.59
HDAC3-205ENST00000469550 TCHHQ07283 1943 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 PNMA6EA0A0J9YXQ4 647 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 F6X3S4 739 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 FOXD4L6Q3SYB3 417 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 COL13A1Q5TAT6 717 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 FOXD4L3Q6VB84 417 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 TTLL7Q6ZT98 887 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 LRP10Q7Z4F1 713 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 ZSCAN31Q96LW9 406 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 STK31Q9BXU1 1019 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms