RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 FBXW7Q969H0 707 aa20.53■□□□□ 0.88
VCX3A-201ENST00000381089 PI4KAP2A4QPH2 592 aa20.52■□□□□ 0.88
VCX3A-201ENST00000381089 IGHMBP2P38935 993 aaKnown RBP20.52■□□□□ 0.88
VCX3A-201ENST00000381089 TTLL12Q14166 644 aaPredicted RBP20.52■□□□□ 0.88
VCX3A-201ENST00000381089 PI4KAP1Q8N8J0 262 aa20.52■□□□□ 0.88
VCX3A-201ENST00000381089 TTLL11Q8NHH1 800 aa20.52■□□□□ 0.88
VCX3A-201ENST00000381089 MINPP1Q9UNW1 487 aa20.52■□□□□ 0.88
VCX3A-201ENST00000381089 MYH3P11055 1940 aa20.52■□□□□ 0.88
VCX3A-201ENST00000381089 CCT4P50991 539 aaKnown RBP20.51■□□□□ 0.87
VCX3A-201ENST00000381089 COA1Q9GZY4 146 aa20.51■□□□□ 0.87
VCX3A-201ENST00000381089 GREM2Q9H772 168 aa20.51■□□□□ 0.87
VCX3A-201ENST00000381089 IGKV5-2P06315 115 aa20.5■□□□□ 0.87
VCX3A-201ENST00000381089 STRIP1Q5VSL9 837 aa20.5■□□□□ 0.87
VCX3A-201ENST00000381089 LEMD3Q9Y2U8 911 aa20.5■□□□□ 0.87
VCX3A-201ENST00000381089 NBPF9Q3BBW0 867 aa20.49■□□□□ 0.87
VCX3A-201ENST00000381089 DACT2Q5SW24 774 aa20.49■□□□□ 0.87
VCX3A-201ENST00000381089 ANKRD2Q9GZV1 360 aa20.49■□□□□ 0.87
VCX3A-201ENST00000381089 HDAC9Q9UKV0 1011 aa20.49■□□□□ 0.87
VCX3A-201ENST00000381089 NEURL1BA8MQ27 555 aa20.48■□□□□ 0.87
VCX3A-201ENST00000381089 PKN2Q16513 984 aaKnown RBP20.48■□□□□ 0.87
VCX3A-201ENST00000381089 TSPYL6Q8N831 410 aa20.48■□□□□ 0.87
VCX3A-201ENST00000381089 MPHOSPH8Q99549 860 aa20.48■□□□□ 0.87
VCX3A-201ENST00000381089 SPEF2Q9C093 1822 aa20.48■□□□□ 0.87
VCX3A-201ENST00000381089 UBE2Q2LH0YL09 131 aa20.47■□□□□ 0.87
VCX3A-201ENST00000381089 WNT10BO00744 389 aa20.47■□□□□ 0.87
VCX3A-201ENST00000381089 SOX10P56693 466 aa20.47■□□□□ 0.87
VCX3A-201ENST00000381089 CWF19L2Q2TBE0 894 aaKnown RBP20.47■□□□□ 0.87
VCX3A-201ENST00000381089 UBE3BQ7Z3V4 1068 aa20.47■□□□□ 0.87
VCX3A-201ENST00000381089 APOBEC3FQ8IUX4 373 aaKnown RBP20.47■□□□□ 0.87
VCX3A-201ENST00000381089 SCAF8Q9UPN6 1271 aaKnown RBP20.47■□□□□ 0.87
VCX3A-201ENST00000381089 KCNJ4P48050 445 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 SREBF2Q12772 1141 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 TTLL5Q6EMB2 1281 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 MOB2Q70IA6 237 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 ARMC9Q7Z3E5 817 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 MYH16Q9H6N6 1097 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 ZNF804BA4D1E1 1349 aa20.46■□□□□ 0.87
VCX3A-201ENST00000381089 H7C1W4 665 aa20.45■□□□□ 0.86
VCX3A-201ENST00000381089 TWISTNBQ3B726 338 aaPredicted RBP20.45■□□□□ 0.86
VCX3A-201ENST00000381089 PRAMEF18Q5VWM3 479 aa20.45■□□□□ 0.86
VCX3A-201ENST00000381089 TSR2Q969E8 191 aaKnown RBP20.45■□□□□ 0.86
VCX3A-201ENST00000381089 MXD3Q9BW11 206 aa20.45■□□□□ 0.86
VCX3A-201ENST00000381089 PDE4DIPQ5VU43 2346 aa20.45■□□□□ 0.86
VCX3A-201ENST00000381089 WTIPA6NIX2 430 aaPredicted RBP20.44■□□□□ 0.86
VCX3A-201ENST00000381089 SLC4A2P04920 1241 aa20.44■□□□□ 0.86
VCX3A-201ENST00000381089 ITGA6P23229 1130 aa20.44■□□□□ 0.86
VCX3A-201ENST00000381089 PLA2G12BQ9BX93 195 aa20.44■□□□□ 0.86
VCX3A-201ENST00000381089 SASH1O94885 1247 aa20.43■□□□□ 0.86
VCX3A-201ENST00000381089 TM4SF4P48230 202 aa20.43■□□□□ 0.86
VCX3A-201ENST00000381089 GCKRQ14397 625 aa20.43■□□□□ 0.86
VCX3A-201ENST00000381089 CCDC27Q2M243 656 aa20.43■□□□□ 0.86
VCX3A-201ENST00000381089 TNRC18O15417 2968 aaPredicted RBP20.42■□□□□ 0.86
VCX3A-201ENST00000381089 TBC1D8O95759 1140 aa20.42■□□□□ 0.86
VCX3A-201ENST00000381089 NOM1Q5C9Z4 860 aaKnown RBP20.42■□□□□ 0.86
VCX3A-201ENST00000381089 KIAA0825Q8IV33 1275 aa20.42■□□□□ 0.86
VCX3A-201ENST00000381089 ZNF296Q8WUU4 475 aaPredicted RBP20.42■□□□□ 0.86
VCX3A-201ENST00000381089 HPS5Q9UPZ3 1129 aa20.42■□□□□ 0.86
VCX3A-201ENST00000381089 GTF2IP78347 998 aa20.41■□□□□ 0.86
VCX3A-201ENST00000381089 FLIIQ13045 1269 aa20.41■□□□□ 0.86
VCX3A-201ENST00000381089 FKBP5Q13451 457 aaPredicted RBP20.41■□□□□ 0.86
VCX3A-201ENST00000381089 TXNRD3Q86VQ6 643 aa20.41■□□□□ 0.86
VCX3A-201ENST00000381089 ANKRD18BA2A2Z9 1011 aa20.4■□□□□ 0.86
VCX3A-201ENST00000381089 COL1A1P02452 1464 aaPredicted RBP20.4■□□□□ 0.86
VCX3A-201ENST00000381089 MKRN3Q13064 507 aaKnown RBP20.4■□□□□ 0.86
VCX3A-201ENST00000381089 G2E3Q7L622 706 aa20.4■□□□□ 0.86
VCX3A-201ENST00000381089 DNAAF4Q8WXU2 420 aa20.4■□□□□ 0.86
VCX3A-201ENST00000381089 ZNF646O15015 1829 aaPredicted RBP20.39■□□□□ 0.86
VCX3A-201ENST00000381089 IL16Q14005 1332 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 GPR25O00155 361 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 ALDH1A1P00352 501 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 CHRNDQ07001 517 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 PRKG1Q13976 671 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 DLGAP5Q15398 846 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 WWC1Q8IX03 1113 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 LINS1Q8NG48 757 aa20.39■□□□□ 0.85
VCX3A-201ENST00000381089 ANGEL1Q9UNK9 670 aaKnown RBP20.39■□□□□ 0.85
VCX3A-201ENST00000381089 MYO1BO43795 1136 aa20.38■□□□□ 0.85
VCX3A-201ENST00000381089 CSF1RP07333 972 aa20.38■□□□□ 0.85
VCX3A-201ENST00000381089 PTPN12Q05209 780 aaKnown RBP20.38■□□□□ 0.85
VCX3A-201ENST00000381089 CD209Q9NNX6 404 aa20.38■□□□□ 0.85
VCX3A-201ENST00000381089 PCDH10Q9P2E7 1040 aa20.38■□□□□ 0.85
VCX3A-201ENST00000381089 FKTNO75072 461 aa20.37■□□□□ 0.85
VCX3A-201ENST00000381089 KLRK1P26718 216 aa20.37■□□□□ 0.85
VCX3A-201ENST00000381089 IFIT5Q13325 482 aaKnown RBP20.37■□□□□ 0.85
VCX3A-201ENST00000381089 FBXO46Q6PJ61 603 aaPredicted RBP20.37■□□□□ 0.85
VCX3A-201ENST00000381089 CFHR5Q9BXR6 569 aa20.37■□□□□ 0.85
VCX3A-201ENST00000381089 PPP2R3BQ9Y5P8 575 aa20.37■□□□□ 0.85
VCX3A-201ENST00000381089 CACNA1FO60840 1977 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 PPP1R12BO60237 982 aaPredicted RBP20.36■□□□□ 0.85
VCX3A-201ENST00000381089 CASP7P55210 303 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 INHBEP58166 350 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 LDLRAD1Q5T700 205 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 ZNF804AQ7Z570 1209 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 ZBED3Q96IU2 234 aaPredicted RBP20.36■□□□□ 0.85
VCX3A-201ENST00000381089 DEFB129Q9H1M3 183 aa20.36■□□□□ 0.85
VCX3A-201ENST00000381089 MANSC4A6NHS7 340 aaPredicted RBP20.35■□□□□ 0.85
VCX3A-201ENST00000381089 NCBP3Q53F19 620 aaKnown RBP20.35■□□□□ 0.85
VCX3A-201ENST00000381089 PRPF38BQ5VTL8 546 aaKnown RBP20.35■□□□□ 0.85
VCX3A-201ENST00000381089 SPRYD7Q5W111 196 aa20.35■□□□□ 0.85
VCX3A-201ENST00000381089 MTMR14Q8NCE2 650 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms