RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ERBB3P21860 1342 aa24.7■■□□□ 1.55
UPF3A-202ENST00000375299 FBXO38Q6PIJ6 1188 aa24.7■■□□□ 1.54
UPF3A-202ENST00000375299 TFCP2Q12800 502 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 IMPACTQ9P2X3 320 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 ABCC6O95255 1503 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 ME1P48163 572 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 APOBRQ0VD83 1088 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 NBPF11Q86T75 865 aa24.69■■□□□ 1.54
UPF3A-202ENST00000375299 RFX5P48382 616 aaPredicted RBP24.68■■□□□ 1.54
UPF3A-202ENST00000375299 TERF2Q15554 542 aa24.68■■□□□ 1.54
UPF3A-202ENST00000375299 HAUS7Q99871 368 aa24.68■■□□□ 1.54
UPF3A-202ENST00000375299 SALL1Q9NSC2 1324 aa24.68■■□□□ 1.54
UPF3A-202ENST00000375299 C5P01031 1676 aa24.68■■□□□ 1.54
UPF3A-202ENST00000375299 SH3TC1Q8TE82 1336 aa24.68■■□□□ 1.54
UPF3A-202ENST00000375299 CAMTA1Q9Y6Y1 1673 aa24.67■■□□□ 1.54
UPF3A-202ENST00000375299 MRPS27Q92552 414 aaKnown RBP24.67■■□□□ 1.54
UPF3A-202ENST00000375299 AGXT2Q9BYV1 514 aa24.67■■□□□ 1.54
UPF3A-202ENST00000375299 AXIN2Q9Y2T1 843 aa24.67■■□□□ 1.54
UPF3A-202ENST00000375299 PTPN12Q05209 780 aaKnown RBP24.67■■□□□ 1.54
UPF3A-202ENST00000375299 FMR1NBQ8N0W7 255 aaPredicted RBP24.67■■□□□ 1.54
UPF3A-202ENST00000375299 MYD88Q99836 296 aa24.67■■□□□ 1.54
UPF3A-202ENST00000375299 ADAMTS7Q9UKP4 1686 aa24.67■■□□□ 1.54
UPF3A-202ENST00000375299 LMOD2Q6P5Q4 547 aa24.66■■□□□ 1.54
UPF3A-202ENST00000375299 ILDR1Q86SU0 546 aaPredicted RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 ERCC4Q92889 916 aaPredicted RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 DBNDD2Q9BQY9 259 aa24.66■■□□□ 1.54
UPF3A-202ENST00000375299 CCT2P78371 535 aaKnown RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 EXOSC10Q01780 885 aaKnown RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 DDX46Q7L014 1031 aaKnown RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 METTL22Q9BUU2 404 aaPredicted RBP24.66■■□□□ 1.54
UPF3A-202ENST00000375299 E4F1Q66K89 784 aaPredicted RBP24.65■■□□□ 1.54
UPF3A-202ENST00000375299 KBTBD3Q8NAB2 608 aa24.65■■□□□ 1.54
UPF3A-202ENST00000375299 CCDC150Q8NCX0 1101 aa24.65■■□□□ 1.54
UPF3A-202ENST00000375299 FBXW7Q969H0 707 aa24.65■■□□□ 1.54
UPF3A-202ENST00000375299 L2HGDHQ9H9P8 463 aa24.65■■□□□ 1.54
UPF3A-202ENST00000375299 PCDHA7Q9UN72 937 aa24.65■■□□□ 1.54
UPF3A-202ENST00000375299 GUCY1B3Q02153 619 aa24.64■■□□□ 1.54
UPF3A-202ENST00000375299 XAGE3Q8WTP9 111 aa24.64■■□□□ 1.54
UPF3A-202ENST00000375299 BPIFA3Q9BQP9 254 aa24.64■■□□□ 1.54
UPF3A-202ENST00000375299 AFDNP55196 1824 aaKnown RBP24.64■■□□□ 1.53
UPF3A-202ENST00000375299 LMTK3Q96Q04 1460 aa24.64■■□□□ 1.53
UPF3A-202ENST00000375299 MYL6BP14649 208 aa24.64■■□□□ 1.53
UPF3A-202ENST00000375299 ADALQ6DHV7 355 aa24.64■■□□□ 1.53
UPF3A-202ENST00000375299 SDF4Q9BRK5 362 aa24.64■■□□□ 1.53
UPF3A-202ENST00000375299 NCOA5Q9HCD5 579 aaKnown RBP24.64■■□□□ 1.53
UPF3A-202ENST00000375299 CARMIL3Q8ND23 1372 aa24.63■■□□□ 1.53
UPF3A-202ENST00000375299 PALLDQ8WX93 1383 aa24.63■■□□□ 1.53
UPF3A-202ENST00000375299 PPP1R13BQ96KQ4 1090 aa24.63■■□□□ 1.53
UPF3A-202ENST00000375299 DSCC1Q9BVC3 393 aa24.63■■□□□ 1.53
UPF3A-202ENST00000375299 TRPM3Q9HCF6 1732 aaPredicted RBP24.63■■□□□ 1.53
UPF3A-202ENST00000375299 A0A1W2PQ27 194 aa24.62■■□□□ 1.53
UPF3A-202ENST00000375299 A0A1W2PQ64 194 aa24.62■■□□□ 1.53
UPF3A-202ENST00000375299 A0A1W2PQD8 194 aa24.62■■□□□ 1.53
UPF3A-202ENST00000375299 PSDA5PKW4 1024 aaPredicted RBP24.62■■□□□ 1.53
UPF3A-202ENST00000375299 RTEL1Q9NZ71 1219 aa24.62■■□□□ 1.53
UPF3A-202ENST00000375299 A0A1B0GVL5 298 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 KCNJ6P48051 423 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 RABL6Q3YEC7 729 aaPredicted RBP24.61■■□□□ 1.53
UPF3A-202ENST00000375299 COPS6Q7L5N1 327 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 XPO4Q9C0E2 1151 aaKnown RBP24.61■■□□□ 1.53
UPF3A-202ENST00000375299 HELLSQ9NRZ9 838 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 PODXL2Q9NZ53 605 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 KIAA1468Q9P260 1216 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 PDIA3P30101 505 aaKnown RBP24.61■■□□□ 1.53
UPF3A-202ENST00000375299 DPCR1Q3MIW9 517 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 ARMCX5Q6P1M9 558 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 TMC6Q7Z403 805 aa24.61■■□□□ 1.53
UPF3A-202ENST00000375299 ZNF274Q96GC6 653 aaPredicted RBP24.61■■□□□ 1.53
UPF3A-202ENST00000375299 NAP1L2Q9ULW6 460 aaPredicted RBP24.61■■□□□ 1.53
UPF3A-202ENST00000375299 SMC2O95347 1197 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 ZRSR1Q15695 479 aaKnown RBP24.6■■□□□ 1.53
UPF3A-202ENST00000375299 CHMP4CQ96CF2 233 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 ZNF446Q9NWS9 450 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 IFNKQ9P0W0 207 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 E7EWF7 191 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 H2AFXP16104 143 aaPredicted RBP24.6■■□□□ 1.53
UPF3A-202ENST00000375299 NDUFA8P51970 172 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 DHX8Q14562 1220 aaKnown RBP24.6■■□□□ 1.53
UPF3A-202ENST00000375299 KRT28Q7Z3Y7 464 aa24.6■■□□□ 1.53
UPF3A-202ENST00000375299 SFPQP23246 707 aaKnown RBP eCLIP24.59■■□□□ 1.53
UPF3A-202ENST00000375299 PPFIA3O75145 1194 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 TUBB4AP04350 444 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 TRHP20396 242 aaPredicted RBP24.59■■□□□ 1.53
UPF3A-202ENST00000375299 CCDC93Q567U6 631 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 ZNF790Q6PG37 636 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 SYT10Q6XYQ8 523 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 LINC00301Q8NCQ3 95 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 RGPD5Q99666 1765 aa24.59■■□□□ 1.53
UPF3A-202ENST00000375299 NEDD4P46934 1319 aa24.58■■□□□ 1.53
UPF3A-202ENST00000375299 NRDCO43847 1150 aa24.58■■□□□ 1.52
UPF3A-202ENST00000375299 FDPSP14324 419 aaKnown RBP24.58■■□□□ 1.52
UPF3A-202ENST00000375299 TPM4P67936 248 aa24.58■■□□□ 1.52
UPF3A-202ENST00000375299 FAM193AP78312 1265 aa24.58■■□□□ 1.52
UPF3A-202ENST00000375299 SLC39A6Q13433 755 aa24.58■■□□□ 1.52
UPF3A-202ENST00000375299 ERCC6LQ2NKX8 1250 aa24.58■■□□□ 1.52
UPF3A-202ENST00000375299 CCDC66A2RUB6 948 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 STK38Q15208 465 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 NPHP1O15259 732 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 BMS1Q14692 1282 aaKnown RBP24.57■■□□□ 1.52
UPF3A-202ENST00000375299 SF3A1Q15459 793 aaKnown RBP24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 185.5 ms