RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 C9orf78Q9NZ63 289 aaPredicted RBP11.74□□□□□ -0.53
CLDN1-201ENST00000295522 NDUFB9Q9Y6M9 179 aa11.74□□□□□ -0.53
CLDN1-201ENST00000295522 KIAA0232Q92628 1395 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 TMEM232C9JQI7 657 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 ATP8B1O43520 1251 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 TFRCP02786 760 aaKnown RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 TXLNAP40222 546 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 DNAJC21Q5F1R6 531 aaKnown RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 HDGFL1Q5TGJ6 251 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 SMARCC1Q92922 1105 aaPredicted RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 EDC3Q96F86 508 aaKnown RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 ZSCAN16Q9H4T2 348 aaPredicted RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 NPATQ14207 1427 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 RPGRIP1LQ68CZ1 1315 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 TTC41PQ6P2S7 1318 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 ERLIN2O94905 339 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 CCDC172P0C7W6 258 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 MARCKSP29966 332 aaPredicted RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 TAF7Q15545 349 aaPredicted RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 BAG1Q99933 345 aaPredicted RBP11.73□□□□□ -0.53
CLDN1-201ENST00000295522 ABCB6Q9NP58 842 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 A0A0D9SFI3 127 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 HSP90AB2PQ58FF8 381 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 FBXW10Q5XX13 1052 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 MCTP2Q6DN12 878 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 RABGGTAQ92696 567 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 CEP83Q9Y592 693 aa11.73□□□□□ -0.53
CLDN1-201ENST00000295522 PPARDQ03181 441 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 NECTIN1Q15223 517 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 HSP90AB3PQ58FF7 597 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TRIM65Q6PJ69 517 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 MPHOSPH8Q99549 860 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TM6SF1Q9BZW5 370 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 KIAA1468Q9P260 1216 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 FANCGO15287 622 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 CCT5P48643 541 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TOB2Q14106 344 aaPredicted RBP11.72□□□□□ -0.53
CLDN1-201ENST00000295522 EIF4A2Q14240 407 aaKnown RBP11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TTC19Q6DKK2 380 aaPredicted RBP11.72□□□□□ -0.53
CLDN1-201ENST00000295522 SYNE3Q6ZMZ3 975 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 MMS22LQ6ZRQ5 1243 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TOGARAM2Q6ZUX3 1019 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 GIMAP7Q8NHV1 300 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 ACBD3Q9H3P7 528 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 RAI14Q9P0K7 980 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 AKAP2Q9Y2D5 859 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 CHRM1P11229 460 aaPredicted RBP11.72□□□□□ -0.53
CLDN1-201ENST00000295522 ATP6V1AP38606 617 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 OLFM4Q6UX06 510 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 NEK1Q96PY6 1258 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 PCDHA7Q9UN72 937 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 TULP4Q9NRJ4 1543 aa11.72□□□□□ -0.53
CLDN1-201ENST00000295522 PNPLA6Q8IY17 1366 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 ZFYVE16Q7Z3T8 1539 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 PTPDC1A2A3K4 754 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 CCDC151A5D8V7 595 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 ECM2O94769 699 aaPredicted RBP11.71□□□□□ -0.53
CLDN1-201ENST00000295522 BRD2P25440 801 aaKnown RBP11.71□□□□□ -0.53
CLDN1-201ENST00000295522 ZNF569Q5MCW4 686 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 NUTM2GQ5VZR2 741 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 CCDC129Q6ZRS4 1044 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 TADA2BQ86TJ2 420 aa11.71□□□□□ -0.53
CLDN1-201ENST00000295522 VWA3AA6NCI4 1184 aa11.71□□□□□ -0.54
CLDN1-201ENST00000295522 CBFA2T2O43439 604 aa11.71□□□□□ -0.54
CLDN1-201ENST00000295522 TUBB4AP04350 444 aa11.71□□□□□ -0.54
CLDN1-201ENST00000295522 SUFUQ9UMX1 484 aa11.71□□□□□ -0.54
CLDN1-201ENST00000295522 PSEN1P49768 467 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 HSP90AB4PQ58FF6 505 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 CNPY4Q8N129 248 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 EVI5LQ96CN4 794 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 JPH2Q9BR39 696 aaPredicted RBP11.7□□□□□ -0.54
CLDN1-201ENST00000295522 MKRN1Q9UHC7 482 aaKnown RBP11.7□□□□□ -0.54
CLDN1-201ENST00000295522 ABCA9Q8IUA7 1624 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 RDXP35241 583 aaKnown RBP11.7□□□□□ -0.54
CLDN1-201ENST00000295522 LRRC31Q6UY01 552 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 SSH3Q8TE77 659 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 FANCLQ9NW38 375 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 ARHGAP6O43182 974 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 KIF5CO60282 957 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 CORO7P57737 925 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 CASP8Q14790 479 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 NBPF6Q5VWK0 638 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 AFAP1L1Q8TED9 768 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 RIN2Q8WYP3 895 aaPredicted RBP11.7□□□□□ -0.54
CLDN1-201ENST00000295522 NBPF4Q96M43 638 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 MRFAP1Q9Y605 127 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 AOX1Q06278 1338 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 ZFYVE9O95405 1425 aa11.7□□□□□ -0.54
CLDN1-201ENST00000295522 MTF1Q14872 753 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 BRD3Q15059 726 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 LONRF3Q496Y0 759 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 FKBP15Q5T1M5 1219 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 ZNF589Q86UQ0 364 aaPredicted RBP11.69□□□□□ -0.54
CLDN1-201ENST00000295522 PNKPQ96T60 521 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 EPB41L2O43491 1005 aaKnown RBP11.69□□□□□ -0.54
CLDN1-201ENST00000295522 RNF40O75150 1001 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 SCRN1Q12765 414 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 G3BP1Q13283 466 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLDN1-201ENST00000295522 PPP2R5AQ15172 486 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 MTHFSDQ2M296 383 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms