RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM16	YMR128W	FAA4	P47912	694 aa	Known RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	ECI1	Q05871	280 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	APL5	Q08951	932 aa	Known RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	ZRT2	Q12436	422 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	CEX1	Q12453	761 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	CYB2	P00175	591 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	TRP2	P00899	507 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	SNF3	P10870	884 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SSB1	P11484	613 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	THR4	P16120	514 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	YCR051W	P25631	222 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SPT16	P32558	1035 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	REV7	P38927	245 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SSB2	P40150	613 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	BRO1	P48582	844 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	KAP114	P53067	1004 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	BET4	Q00618	327 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	MSH6	Q03834	1242 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	AIM33	Q04516	312 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SMC6	Q12749	1114 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	YKL023W	P36103	277 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	KAP123	P40069	1113 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	VPS53	P47061	822 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	DFG5	Q05031	458 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	GSC2	P40989	1895 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	GCR1	P07261	785 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	RPC53	P25441	422 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	MVD1	P32377	396 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	PUP2	P32379	260 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	ULP2	P40537	1034 aa	Predicted RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	PCL10	P53124	433 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	RET3	P53600	189 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SYH1	Q02875	849 aa	Known RBP	4.06	□□□□□ -1.76
ECM16	YMR128W	SUE1	Q06524	206 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	DSE3	Q08729	430 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	SLP1	Q12232	587 aa		4.06	□□□□□ -1.76
ECM16	YMR128W	RAD51	P25454	400 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	UTR2	P32623	467 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	SEA4	P38164	1038 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
ECM16	YMR128W	STN1	P38960	494 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	LCP5	P40079	357 aa	Predicted RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	AXL1	P40851	1208 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	YJR039W	P47107	1121 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	CBK1	P53894	756 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	YNL040W	P53960	456 aa	Predicted RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	TLG1	Q03322	224 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	ILV6	P25605	309 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	NIP100	P33420	868 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	YEL1	P34225	687 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	NDT80	P38830	627 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	RIO2	P40160	425 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	QDR2	P40474	542 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	TDA10	P42938	290 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	UBP6	P43593	499 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	RPC17	P47076	161 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	NBP1	P52919	319 aa	Predicted RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	GUP1	P53154	560 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	DSE4	P53753	1117 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	RTC4	P53850	401 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	SUB1	P54000	292 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	ATP25	Q03153	612 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	TMA64	Q04600	565 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	SPO21	Q12411	609 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	DPH6	Q12429	685 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	FOB1	O13329	566 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	SRV2	P17555	526 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	CHS3	P29465	1165 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	TFA2	P36145	328 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	PIH1	P38768	344 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	MSN5	P52918	1224 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	UBX4	P54730	416 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	GTR1	Q00582	310 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	SPO19	Q03029	223 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	GNT1	Q12096	491 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	HIF1	Q12373	385 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	NCA2	Q12374	616 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	CMR1	Q12510	522 aa	Known RBP	4.05	□□□□□ -1.76
ECM16	YMR128W	NHA1	Q99271	985 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	RAD61	Q99359	647 aa		4.05	□□□□□ -1.76
ECM16	YMR128W	CDC34	P14682	295 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	CDC10	P25342	322 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	RPL8B	P29453	256 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	PSY2	P40164	858 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	SUT1	P53032	299 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	HED1	Q03937	162 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	TDA9	Q04545	1251 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	FAR8	Q05040	523 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	JIP5	Q06214	492 aa	Predicted RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	OXR1	Q08952	273 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	AIM41	Q12032	185 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	FAL1	Q12099	399 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	YPL066W	Q12194	479 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	LEU1	P07264	779 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	CBF1	P17106	351 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	PRE9	P23638	258 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	MCM5	P29496	775 aa	Known RBP	4.04	□□□□□ -1.76
ECM16	YMR128W	DAL1	P32375	460 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	CDC11	P32458	415 aa		4.04	□□□□□ -1.76
ECM16	YMR128W	FRD1	P32614	470 aa	Known RBP	4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms