RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	MDE1	P47095	244 aa		5.28	□□□□□ -1.56
SEC39	YLR440C	ABM1	P47146	123 aa		5.28	□□□□□ -1.56
SEC39	YLR440C	EIS1	Q05050	843 aa	Known RBP	5.28	□□□□□ -1.56
SEC39	YLR440C	YDL124W	Q07551	312 aa	Known RBP	5.28	□□□□□ -1.56
SEC39	YLR440C	HIS3	P06633	220 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	STE3	P06783	470 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	CDC16	P09798	840 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	DSF1	P0CX08	502 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YNR073C	P0CX09	502 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	ISY1	P21374	235 aa	Predicted RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	RAD53	P22216	821 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	PRP28	P23394	588 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	PUP1	P25043	261 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	SPB1	P25582	841 aa	Predicted RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	RDS1	P25611	832 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	CHS3	P29465	1165 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	DOA4	P32571	926 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	SCT1	P32784	759 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	FTH1	P38310	465 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YBR242W	P38331	238 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	ERP5	P38819	212 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	KEL1	P38853	1164 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	DSS1	P39112	969 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	NIT1	P40447	199 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	LOC1	P43586	204 aa	Predicted RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	VMA10	P48836	114 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	ZIP2	P53061	704 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YML131W	Q03102	365 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YDR131C	Q03899	556 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	SDH5	Q08230	162 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YOR289W	Q12012	251 aa	Predicted RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	SCM3	Q12334	223 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	TMA17	Q12513	150 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	MST1	P07236	462 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	FUS1	P11710	512 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	VPS1	P21576	704 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	DBP1	P24784	617 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	SLA2	P33338	968 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YBR138C	P38277	524 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	IFA38	P38286	347 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	MGE1	P38523	228 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	SRP72	P38688	640 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	YHL050C	P38721	697 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	BCD1	P38772	366 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	PAN5	P38787	379 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	RTT107	P38850	1070 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	VPS53	P47061	822 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	CGR1	P53188	120 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YNR063W	P53749	607 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	MRS2	Q01926	470 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	RSC4	Q02206	625 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	EGD1	Q02642	157 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	PLP1	Q04004	230 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	RBS1	Q05672	457 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	SEC10	Q06245	871 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	EAF1	Q06337	982 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	ABP140	Q08641	628 aa	Known RBP	5.27	□□□□□ -1.57
SEC39	YLR440C	YPR204W	Q08995	1032 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	PIN2	Q12057	282 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	YEL077C	Q3E7X8	1277 aa		5.27	□□□□□ -1.57
SEC39	YLR440C	SUI3	P09064	285 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	VPS17	P32913	551 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	PXL1	P36166	706 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	RFC1	P38630	861 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	NOP16	P40007	231 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	MKT1	P40850	830 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	JJJ2	P46997	583 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	YNL146W	P53906	100 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	PRP42	Q03776	544 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	DYN3	Q04949	312 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	SYO1	Q07395	620 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	TYW1	Q08960	810 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	MNL2	Q12205	849 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	NUP145	P49687	1317 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	CET1	O13297	549 aa	Predicted RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	TRL1	P09880	827 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	DMC1	P25453	334 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	MGM101	P32787	269 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	ULP2	P40537	1034 aa	Predicted RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	CCT7	P42943	550 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	CNN1	P43618	361 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	SPO74	P45819	413 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	NCS6	P53088	359 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	MLC1	P53141	149 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	SIW14	P53965	281 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	VPS16	Q03308	798 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	RVB1	Q03940	463 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	CUE5	Q08412	411 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	YDR056C	Q12025	205 aa		5.26	□□□□□ -1.57
SEC39	YLR440C	YLR419W	Q06698	1435 aa	Known RBP	5.26	□□□□□ -1.57
SEC39	YLR440C	APC1	P53886	1748 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	YML002W	P0CF17	737 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	PHO8	P11491	566 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	SST2	P11972	698 aa	Known RBP	5.25	□□□□□ -1.57
SEC39	YLR440C	MCM10	P32354	571 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	UTP11	P34247	250 aa	Predicted RBP	5.25	□□□□□ -1.57
SEC39	YLR440C	RDH54	P38086	958 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	UTP9	P38882	575 aa	Known RBP	5.25	□□□□□ -1.57
SEC39	YLR440C	SPO22	P40511	975 aa		5.25	□□□□□ -1.57
SEC39	YLR440C	GYP8	P43570	497 aa		5.25	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms