RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C CTF3Q12748 733 aa11.17□□□□□ -0.62
SHM2YLR058C LAA1P39526 2014 aa11.17□□□□□ -0.62
SHM2YLR058C SNF1P06782 633 aaKnown RBP11.16□□□□□ -0.62
SHM2YLR058C TIF1P10081 395 aaKnown RBP11.16□□□□□ -0.62
SHM2YLR058C RNR1P21524 888 aaKnown RBP11.16□□□□□ -0.62
SHM2YLR058C EXO5P38289 585 aa11.16□□□□□ -0.62
SHM2YLR058C SET5P38890 526 aaKnown RBP11.16□□□□□ -0.62
SHM2YLR058C KAP123P40069 1113 aaKnown RBP11.16□□□□□ -0.62
SHM2YLR058C ESL1P40456 1118 aa11.16□□□□□ -0.62
SHM2YLR058C ZAP1P47043 880 aa11.16□□□□□ -0.62
SHM2YLR058C STB4P50104 949 aa11.16□□□□□ -0.62
SHM2YLR058C ESC2Q06340 456 aa11.16□□□□□ -0.62
SHM2YLR058C GAL10P04397 699 aa11.15□□□□□ -0.62
SHM2YLR058C WHI3P34761 661 aaKnown RBP11.15□□□□□ -0.62
SHM2YLR058C MCX1P38323 520 aaPredicted RBP11.15□□□□□ -0.62
SHM2YLR058C DYS1P38791 387 aa11.15□□□□□ -0.62
SHM2YLR058C APT1P49435 187 aaKnown RBP11.15□□□□□ -0.62
SHM2YLR058C ALT1P52893 592 aa11.15□□□□□ -0.62
SHM2YLR058C YGR130CP53278 816 aa11.15□□□□□ -0.62
SHM2YLR058C EEB1Q02891 456 aa11.15□□□□□ -0.62
SHM2YLR058C SOV1Q04748 898 aa11.15□□□□□ -0.62
SHM2YLR058C DAS2Q12084 232 aa11.15□□□□□ -0.62
SHM2YLR058C PET123P17558 318 aa11.14□□□□□ -0.63
SHM2YLR058C CYS3P31373 394 aaKnown RBP11.14□□□□□ -0.63
SHM2YLR058C HXT1P32465 570 aa11.14□□□□□ -0.63
SHM2YLR058C HEL1P36113 551 aa11.14□□□□□ -0.63
SHM2YLR058C SLX1P38324 304 aa11.14□□□□□ -0.63
SHM2YLR058C CAJ1P39101 391 aa11.14□□□□□ -0.63
SHM2YLR058C PHO86P46956 311 aa11.14□□□□□ -0.63
SHM2YLR058C YLR455WQ06188 304 aa11.14□□□□□ -0.63
SHM2YLR058C YLR001CQ07895 862 aa11.14□□□□□ -0.63
SHM2YLR058C SIL1Q08199 421 aa11.14□□□□□ -0.63
SHM2YLR058C YPR027CQ12079 277 aa11.14□□□□□ -0.63
SHM2YLR058C SEC21P32074 935 aaKnown RBP11.13□□□□□ -0.63
SHM2YLR058C YKL050CP35736 922 aa11.13□□□□□ -0.63
SHM2YLR058C YGR021WP53212 290 aa11.13□□□□□ -0.63
SHM2YLR058C SYH1Q02875 849 aaKnown RBP11.13□□□□□ -0.63
SHM2YLR058C CHS1P08004 1131 aa11.12□□□□□ -0.63
SHM2YLR058C EFB1P32471 206 aaKnown RBP11.12□□□□□ -0.63
SHM2YLR058C AGP2P38090 596 aa11.12□□□□□ -0.63
SHM2YLR058C TCD1P38756 429 aa11.12□□□□□ -0.63
SHM2YLR058C YTA12P40341 825 aa11.12□□□□□ -0.63
SHM2YLR058C BOP3P53958 396 aa11.12□□□□□ -0.63
SHM2YLR058C RPS3P05750 240 aaKnown RBP11.11□□□□□ -0.63
SHM2YLR058C ERG11P10614 530 aa11.11□□□□□ -0.63
SHM2YLR058C BIO2P32451 375 aa11.11□□□□□ -0.63
SHM2YLR058C TBS1P38114 1094 aa11.11□□□□□ -0.63
SHM2YLR058C NOP13P53883 403 aaKnown RBP RIP-Chip data11.11□□□□□ -0.63not detected
SHM2YLR058C RCR2Q03446 210 aaKnown RBP11.11□□□□□ -0.63
SHM2YLR058C SKY1Q03656 742 aa11.11□□□□□ -0.63
SHM2YLR058C RRN6P32786 894 aa11.1□□□□□ -0.63
SHM2YLR058C OPT1P40897 799 aa11.1□□□□□ -0.63
SHM2YLR058C VAC14Q06708 880 aa11.1□□□□□ -0.63
SHM2YLR058C PKH2Q12236 1081 aaKnown RBP11.1□□□□□ -0.63
SHM2YLR058C HIP1P06775 603 aa11.09□□□□□ -0.63
SHM2YLR058C CIT2P08679 460 aa11.09□□□□□ -0.63
SHM2YLR058C SRB4P32569 687 aa11.09□□□□□ -0.63
SHM2YLR058C MAC1P35192 417 aa11.09□□□□□ -0.63
SHM2YLR058C STP1Q00947 519 aa11.09□□□□□ -0.63
SHM2YLR058C NGL3Q03210 505 aa11.09□□□□□ -0.63
SHM2YLR058C YDR222WQ04925 415 aa11.09□□□□□ -0.63
SHM2YLR058C SML1Q04964 104 aa11.09□□□□□ -0.63
SHM2YLR058C ESC8Q08119 714 aa11.09□□□□□ -0.63
SHM2YLR058C REC8Q12188 680 aa11.09□□□□□ -0.63
SHM2YLR058C MCM16Q12262 181 aa11.09□□□□□ -0.63
SHM2YLR058C YER152CP10356 443 aa11.09□□□□□ -0.63
SHM2YLR058C CKI1P20485 582 aa11.09□□□□□ -0.63
SHM2YLR058C VPS3P23643 1011 aa11.09□□□□□ -0.63
SHM2YLR058C BCH2P36122 765 aa11.09□□□□□ -0.63
SHM2YLR058C MRPL7P36519 292 aa11.09□□□□□ -0.63
SHM2YLR058C XDJ1P39102 459 aa11.09□□□□□ -0.63
SHM2YLR058C GEM1P39722 662 aa11.09□□□□□ -0.63
SHM2YLR058C POL31P46957 487 aa11.09□□□□□ -0.63
SHM2YLR058C YJR054WP47114 497 aa11.09□□□□□ -0.63
SHM2YLR058C PUS2P53167 370 aa11.09□□□□□ -0.63
SHM2YLR058C YGL036WP53185 909 aaPredicted RBP11.09□□□□□ -0.63
SHM2YLR058C BTN2P53286 410 aa11.09□□□□□ -0.63
SHM2YLR058C SPC98P53540 846 aa11.09□□□□□ -0.63
SHM2YLR058C GPD1Q00055 391 aaKnown RBP11.09□□□□□ -0.63
SHM2YLR058C TIF35Q04067 274 aaKnown RBP11.09□□□□□ -0.63
SHM2YLR058C YMR018WQ04364 514 aa11.09□□□□□ -0.63
SHM2YLR058C MSD1P15179 658 aaKnown RBP11.08□□□□□ -0.64
SHM2YLR058C VBA3P25594 458 aa11.08□□□□□ -0.64
SHM2YLR058C ADK2P26364 225 aa11.08□□□□□ -0.64
SHM2YLR058C GYP6P32806 458 aa11.08□□□□□ -0.64
SHM2YLR058C BLI1P35727 113 aa11.08□□□□□ -0.64
SHM2YLR058C VBA5P36172 582 aa11.08□□□□□ -0.64
SHM2YLR058C YHR202WP38887 602 aa11.08□□□□□ -0.64
SHM2YLR058C BUD16P39988 312 aa11.08□□□□□ -0.64
SHM2YLR058C YMR1P47147 688 aaKnown RBP RIP-Chip data11.08□□□□□ -0.64not detected
SHM2YLR058C YGR111WP53265 400 aa11.08□□□□□ -0.64
SHM2YLR058C MZM1Q03429 123 aaPredicted RBP11.08□□□□□ -0.64
SHM2YLR058C BI2P03873 423 aa11.07□□□□□ -0.64
SHM2YLR058C BI4P03879 638 aa11.07□□□□□ -0.64
SHM2YLR058C NOP4P37838 685 aaKnown RBP11.07□□□□□ -0.64
SHM2YLR058C YMC2P38087 329 aa11.07□□□□□ -0.64
SHM2YLR058C NCL1P38205 684 aaKnown RBP11.07□□□□□ -0.64
SHM2YLR058C CBR1P38626 284 aaKnown RBP11.07□□□□□ -0.64
SHM2YLR058C YEL075CP39972 122 aa11.07□□□□□ -0.64
SHM2YLR058C JHD1P40034 492 aa11.07□□□□□ -0.64
Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms