RNA–Protein interactions for RNA: YGL103W

RPL28, Transcript of Ribosomal 60S subunit protein L28, yeast

Gene RPL28, Length 450 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL28	YGL103W	RNR4	P49723	345 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	FMS1	P50264	508 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	SNU71	P53207	620 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	YGR111W	P53265	400 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	KTR5	P53966	522 aa	Predicted RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	PTA1	Q01329	785 aa	Predicted RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	UBP2	Q01476	1272 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	ATG16	Q03818	150 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	YMR027W	Q04371	470 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	SKG3	Q06315	1026 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	ACK1	Q07622	623 aa	Predicted RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	RLP24	Q07915	199 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	PCL8	Q08966	492 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	YPT6	Q99260	215 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	SUP45	P12385	437 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	PMS1	P14242	873 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	RET1	P22276	1149 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	KAR4	P25583	335 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	MGT1	P26188	188 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	CAP1	P28495	268 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	KIP2	P28743	706 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	EFT1	P32324	842 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	YKU70	P32807	602 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	TRM2	P33753	639 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	YBL028C	P38202	106 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	ALG5	P40350	334 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	ALA1	P40825	983 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	LCB2	P40970	561 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	BRE2	P43132	505 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	RGD2	P43556	714 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	TAF1	P46677	1066 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	CLA4	P48562	842 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	INP52	P50942	1183 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	YML6	P51998	286 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	ARI1	P53111	347 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	CNM67	P53865	581 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	ORC4	P54791	529 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	UFO1	Q04511	668 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	SVF1	Q05515	481 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	RSA3	Q05942	220 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	ABP140	Q08641	628 aa	Known RBP	5.18	□□□□□ -1.58
RPL28	YGL103W	LAP2	Q10740	671 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	SLX4	Q12098	748 aa		5.18	□□□□□ -1.58
RPL28	YGL103W	YML002W	P0CF17	737 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	TAL1	P15019	335 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	HEM15	P16622	393 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	DBP5	P20449	482 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	SNT1	P25357	1226 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	SPS22	P25380	463 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	MLS1	P30952	554 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	COY1	P34237	679 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	PGM2	P37012	569 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	YBR032W	P38223	100 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	UBP14	P38237	781 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	PFF1	P38244	976 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	SPC97	P38863	823 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	STN1	P38960	494 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	YIL055C	P40523	627 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	SUM1	P46676	1062 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	NOG2	P53742	486 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	ALD6	P54115	500 aa	Known RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	ERO1	Q03103	563 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	YPR097W	Q06839	1073 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	RRG1	Q12167	365 aa	Predicted RBP	5.17	□□□□□ -1.58
RPL28	YGL103W	YDL206W	Q12424	762 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	RRD2	Q12461	358 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	RKM4	Q12504	494 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	ARP6	Q12509	438 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	YBL029C-A	Q3E756	94 aa		5.17	□□□□□ -1.58
RPL28	YGL103W	KEX2	P13134	814 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	TYR1	P20049	452 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
RPL28	YGL103W	DAL2	P25335	343 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	TPS2	P31688	896 aa	Known RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	MUD1	P32605	298 aa	Known RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	PEX2	P32800	271 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	GYP6	P32806	458 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
RPL28	YGL103W	ECM4	P36156	370 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	PAM1	P37304	830 aa	Known RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	MRX3	P38172	270 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	TOS1	P38288	455 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	OAF1	P39720	1047 aa	Predicted RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	SCS2	P40075	244 aa	Known RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	JEM1	P40358	645 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	LIA1	P47120	325 aa	Known RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	LYS4	P49367	693 aa	Predicted RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	USE1	P53146	245 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	RPA49	Q01080	415 aa	Predicted RBP	5.16	□□□□□ -1.58
RPL28	YGL103W	PPM1	Q04081	328 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	YDR222W	Q04925	415 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	DON1	Q05610	365 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	GAS5	Q08193	484 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	YLR053C	Q12026	108 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	GRX6	Q12438	231 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	MYO1	P08964	1928 aa		5.16	□□□□□ -1.58
RPL28	YGL103W	PMD1	P32634	1753 aa		5.15	□□□□□ -1.58
RPL28	YGL103W	ENO2	P00925	437 aa	Known RBP	5.15	□□□□□ -1.59
RPL28	YGL103W	SSC1	P0CS90	654 aa	Known RBP	5.15	□□□□□ -1.59
RPL28	YGL103W	PDR1	P12383	1068 aa		5.15	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 164.3 ms