RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	LPD1	P09624	499 aa	Known RBP	4.95	□□□□□ -1.62
CDC48	YDL126C	KRR1	P25586	316 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC48	YDL126C	DBF20	P32328	564 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	DPH2	P32461	534 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
CDC48	YDL126C	KTR4	P38131	464 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	YHL041W	P38730	149 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	XDJ1	P39102	459 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	YJL181W	P46987	611 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	YAP1802	P53309	568 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	EST2	Q06163	884 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	BRE4	Q07660	1125 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	PGA3	Q12746	312 aa	Known RBP	4.95	□□□□□ -1.62
CDC48	YDL126C	MSS18	P08593	268 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	CDC16	P09798	840 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	PCL2	P25693	308 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	MSP1	P28737	362 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	ADD66	P36040	267 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	YKL151C	P36059	337 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	PRK1	P40494	810 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	UBP6	P43593	499 aa	Known RBP	4.94	□□□□□ -1.62
CDC48	YDL126C	UBA2	P52488	636 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	THI73	Q07904	523 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	AVO1	Q08236	1176 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	YLL054C	Q12244	843 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	NCB2	Q92317	146 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	SPO16	P17122	198 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	MNT3	P40549	630 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	RPN11	P43588	306 aa	Known RBP	4.94	□□□□□ -1.62
CDC48	YDL126C	CCM1	P48237	864 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC48	YDL126C	OCA1	P50946	238 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC48	YDL126C	RKM2	Q03942	479 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	HSP42	Q12329	375 aa		4.94	□□□□□ -1.62
CDC48	YDL126C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	RIP-Chip
CDC48	YDL126C	MSD1	P15179	658 aa	Known RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	VPS8	P39702	1274 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	HUL4	P40985	892 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	ERR3	P42222	437 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	SRB7	P47822	140 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	MEP3	P53390	489 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	ALO1	P54783	526 aa	Known RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	YMR074C	Q04773	145 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	ERT1	P38140	529 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	NCL1	P38205	684 aa	Known RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	PNT1	P38969	423 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	YNL247W	P53852	767 aa	Known RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	SMD2	Q06217	110 aa	Known RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	GGA1	Q06336	557 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	SPP382	Q06411	708 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	RSC2	Q06488	889 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	GIC2	Q06648	383 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	MDM38	Q08179	573 aa		4.93	□□□□□ -1.62
CDC48	YDL126C	RRP36	Q12481	300 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC48	YDL126C	ILS1	P09436	1072 aa	Known RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	CDC10	P25342	322 aa	Known RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	SSH4	P32343	579 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	NUP120	P35729	1037 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	PET10	P36139	283 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	MED8	P38304	223 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	VPS41	P38959	992 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	GCD10	P41814	478 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	GCR2	Q01722	534 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	UME1	Q03010	460 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	TRS130	Q03660	1102 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	VMS1	Q04311	632 aa	Known RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	NDL1	Q06568	189 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	CEX1	Q12453	761 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	PDR18	P53756	1333 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	PCT1	P13259	424 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	CLN1	P20437	546 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	PSO2	P30620	661 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	YKL107W	P34251	309 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	DHR2	P36009	735 aa	Predicted RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	TRZ1	P36159	838 aa	Predicted RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	ECM2	P38241	364 aa	Known RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	IAH1	P41734	238 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	PEX14	P53112	341 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	YGL082W	P53155	381 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	MRS2	Q01926	470 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	RGA2	Q06407	1009 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	YPR172W	Q06608	200 aa		4.92	□□□□□ -1.62
CDC48	YDL126C	RRP6	Q12149	733 aa	Known RBP	4.92	□□□□□ -1.62
CDC48	YDL126C	DUR1,2	P32528	1835 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	MIH1	P23748	554 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	NPP1	P25353	742 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	RPC82	P32349	654 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	VPH1	P32563	840 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	SER1	P33330	395 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	ECM21	P38167	1117 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	OSH7	P38755	437 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	NPR2	P39923	615 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	MLC1	P53141	149 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	SSL2	Q00578	843 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	NYV1	Q12255	253 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	SSK22	P25390	1331 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	CDC9	P04819	755 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	PRP9	P19736	530 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	ARL1	P38116	183 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	ALG3	P38179	458 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	TPA1	P40032	644 aa	Known RBP	4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms