RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 COPS6Q7L5N1 327 aa18.15■□□□□ 0.5
SHKBP1-208ENST00000595726 NECTIN2Q92692 538 aa18.15■□□□□ 0.5
SHKBP1-208ENST00000595726 R3HDMLQ9H3Y0 253 aa18.15■□□□□ 0.5
SHKBP1-208ENST00000595726 KDM3BQ7LBC6 1761 aa18.14■□□□□ 0.5
SHKBP1-208ENST00000595726 BRCA2P51587 3418 aa18.14■□□□□ 0.5
SHKBP1-208ENST00000595726 VIL1P09327 827 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-208ENST00000595726 MKRN3Q13064 507 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-208ENST00000595726 ERBB4Q15303 1308 aa18.14■□□□□ 0.49
SHKBP1-208ENST00000595726 SH3TC1Q8TE82 1336 aa18.14■□□□□ 0.49
SHKBP1-208ENST00000595726 TCIRG1Q13488 830 aa18.13■□□□□ 0.49
SHKBP1-208ENST00000595726 TMC4Q7Z404 712 aa18.13■□□□□ 0.49
SHKBP1-208ENST00000595726 XAGE3Q8WTP9 111 aa18.13■□□□□ 0.49
SHKBP1-208ENST00000595726 ANKRD36CQ5JPF3 1778 aa18.12■□□□□ 0.49
SHKBP1-208ENST00000595726 TBC1D16Q8TBP0 767 aa18.12■□□□□ 0.49
SHKBP1-208ENST00000595726 COL4A1P02462 1669 aa18.12■□□□□ 0.49
SHKBP1-208ENST00000595726 POTEFA5A3E0 1075 aa18.11■□□□□ 0.49
SHKBP1-208ENST00000595726 TM4SF4P48230 202 aa18.11■□□□□ 0.49
SHKBP1-208ENST00000595726 HSP90AB3PQ58FF7 597 aa18.11■□□□□ 0.49
SHKBP1-208ENST00000595726 FAM89AQ96GI7 184 aa18.11■□□□□ 0.49
SHKBP1-208ENST00000595726 SZT2Q5T011 3432 aa18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 ZNF280AP59817 542 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 FKBP1BP68106 108 aa18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 RTL5Q5HYW3 569 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 EYA3Q99504 573 aa18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 ZC3H12CQ9C0D7 883 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 TSPYL4Q9UJ04 414 aa18.1■□□□□ 0.49
SHKBP1-208ENST00000595726 LRRC37AA6NMS7 1700 aa18.09■□□□□ 0.49
SHKBP1-208ENST00000595726 FKTNO75072 461 aa18.09■□□□□ 0.49
SHKBP1-208ENST00000595726 SCN9AQ15858 1988 aa18.08■□□□□ 0.49
SHKBP1-208ENST00000595726 G3V3G9 751 aa18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 FXR1P51114 621 aaKnown RBP eCLIP18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 TTLL12Q14166 644 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 SF3B3Q15393 1217 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 NFE2L2Q16236 605 aa18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 DCAF8Q5TAQ9 597 aa18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 RSBN1LQ6PCB5 846 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 PLEKHF1Q96S99 279 aa18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 A0A0C4DFX4 3053 aa18.08■□□□□ 0.48
SHKBP1-208ENST00000595726 NEFMP07197 916 aa18.07■□□□□ 0.48
SHKBP1-208ENST00000595726 MYOZ2Q9NPC6 264 aa18.07■□□□□ 0.48
SHKBP1-208ENST00000595726 DLG5Q8TDM6 1919 aa18.07■□□□□ 0.48
SHKBP1-208ENST00000595726 ATP5J2-PTCD1G3V325 749 aa18.06■□□□□ 0.48
SHKBP1-208ENST00000595726 RPS8P62241 208 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-208ENST00000595726 NOM1Q5C9Z4 860 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-208ENST00000595726 GMLQ99445 158 aa18.06■□□□□ 0.48
SHKBP1-208ENST00000595726 PAPPA2Q9BXP8 1791 aa18.06■□□□□ 0.48
SHKBP1-208ENST00000595726 UFL1O94874 794 aa18.05■□□□□ 0.48
SHKBP1-208ENST00000595726 USP17L8P0C7I0 530 aa18.05■□□□□ 0.48
SHKBP1-208ENST00000595726 PRKG1Q13976 671 aa18.05■□□□□ 0.48
SHKBP1-208ENST00000595726 NBPF9Q3BBW0 867 aa18.05■□□□□ 0.48
SHKBP1-208ENST00000595726 AGBL3Q8NEM8 1001 aa18.05■□□□□ 0.48
SHKBP1-208ENST00000595726 PTPN12Q05209 780 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-208ENST00000595726 SEC31BQ9NQW1 1179 aa18.04■□□□□ 0.48
SHKBP1-208ENST00000595726 ANKIB1Q9P2G1 1089 aa18.04■□□□□ 0.48
SHKBP1-208ENST00000595726 TRIM17Q9Y577 477 aa18.04■□□□□ 0.48
SHKBP1-208ENST00000595726 PITPNM2Q9BZ72 1349 aa18.03■□□□□ 0.48
SHKBP1-208ENST00000595726 EN2P19622 333 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-208ENST00000595726 KRT24Q2M2I5 525 aa18.03■□□□□ 0.48
SHKBP1-208ENST00000595726 PODXL2Q9NZ53 605 aa18.03■□□□□ 0.48
SHKBP1-208ENST00000595726 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-208ENST00000595726 WTIPA6NIX2 430 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 SREBF2Q12772 1141 aa18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 OTOP1Q7RTM1 612 aa18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 DDX60Q8IY21 1712 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 ISCA1Q9BUE6 129 aa18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 MXD3Q9BW11 206 aa18.02■□□□□ 0.48
SHKBP1-208ENST00000595726 IRS4O14654 1257 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-208ENST00000595726 CFHR5Q9BXR6 569 aa18.01■□□□□ 0.47
SHKBP1-208ENST00000595726 GGA1Q9UJY5 639 aa18.01■□□□□ 0.47
SHKBP1-208ENST00000595726 FZD1Q9UP38 647 aa18.01■□□□□ 0.47
SHKBP1-208ENST00000595726 COLQQ9Y215 455 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-208ENST00000595726 RANBP2P49792 3224 aaKnown RBP18■□□□□ 0.47
SHKBP1-208ENST00000595726 INTS3Q68E01 1043 aaKnown RBP18■□□□□ 0.47
SHKBP1-208ENST00000595726 CHPF2Q9P2E5 772 aa18■□□□□ 0.47
SHKBP1-208ENST00000595726 KIAA0100Q14667 2235 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 USP17L3A6NCW0 530 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 USP17L4A6NCW7 530 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 SPRYD7Q5W111 196 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 ANKRD13DQ6ZTN6 518 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 USP17L1Q7RTZ2 530 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 PLBD2Q8NHP8 589 aa17.99■□□□□ 0.47
SHKBP1-208ENST00000595726 CEP290O15078 2479 aa17.98■□□□□ 0.47
SHKBP1-208ENST00000595726 CCDC85AQ96PX6 553 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-208ENST00000595726 ZNF609O15014 1411 aa17.98■□□□□ 0.47
SHKBP1-208ENST00000595726 WNT10BO00744 389 aa17.97■□□□□ 0.47
SHKBP1-208ENST00000595726 NF2P35240 595 aa17.97■□□□□ 0.47
SHKBP1-208ENST00000595726 RIPK4P57078 832 aa17.97■□□□□ 0.47
SHKBP1-208ENST00000595726 MAPK8IP3Q9UPT6 1336 aa17.97■□□□□ 0.47
SHKBP1-208ENST00000595726 SASH1O94885 1247 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 LDLRAD1Q5T700 205 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 ARMC9Q7Z3E5 817 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 IFNL1Q8IU54 200 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 JARID2Q92833 1246 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 ANGEL1Q9UNK9 670 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 PTPN22Q9Y2R2 807 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 TRIOBPQ9H2D6 2365 aa17.96■□□□□ 0.47
SHKBP1-208ENST00000595726 IGF2BP3O00425 579 aaKnown RBP eCLIP17.95■□□□□ 0.46
SHKBP1-208ENST00000595726 CAP1Q01518 475 aa17.95■□□□□ 0.46
SHKBP1-208ENST00000595726 CD99L2Q8TCZ2 262 aa17.95■□□□□ 0.46
SHKBP1-208ENST00000595726 ALDH1A1P00352 501 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms