RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 CELF1Q92879 486 aaKnown RBP21.32■■□□□ 1
CLK3-223ENST00000568488 TSPYL4Q9UJ04 414 aa21.32■■□□□ 1
CLK3-223ENST00000568488 ANKRD36CQ5JPF3 1778 aa21.32■■□□□ 1
CLK3-223ENST00000568488 MOB2Q70IA6 237 aa21.31■■□□□ 1
CLK3-223ENST00000568488 XAGE3Q8WTP9 111 aa21.31■■□□□ 1
CLK3-223ENST00000568488 VIL1P09327 827 aaKnown RBP21.3■■□□□ 1
CLK3-223ENST00000568488 HABP4Q5JVS0 413 aaKnown RBP21.3■■□□□ 1
CLK3-223ENST00000568488 FBXO46Q6PJ61 603 aaPredicted RBP21.3■■□□□ 1
CLK3-223ENST00000568488 ZC3H12CQ9C0D7 883 aaKnown RBP21.3■■□□□ 1
CLK3-223ENST00000568488 UBE2Q2LH0YL09 131 aa21.29■■□□□ 1
CLK3-223ENST00000568488 FKBP1BP68106 108 aa21.29■■□□□ 1
CLK3-223ENST00000568488 NFE2L2Q16236 605 aa21.29■■□□□ 1
CLK3-223ENST00000568488 CCER1Q8TC90 406 aaPredicted RBP21.29■■□□□ 1
CLK3-223ENST00000568488 GPR25O00155 361 aa21.28■■□□□ 1
CLK3-223ENST00000568488 TBC1D16Q8TBP0 767 aa21.28■■□□□ 1
CLK3-223ENST00000568488 SCAF8Q9UPN6 1271 aaKnown RBP21.28■■□□□ 1
CLK3-223ENST00000568488 MKRN3Q13064 507 aaKnown RBP21.27■■□□□ 1
CLK3-223ENST00000568488 TTLL12Q14166 644 aaPredicted RBP21.27■■□□□ 1
CLK3-223ENST00000568488 DLG5Q8TDM6 1919 aa21.27■■□□□ 1
CLK3-223ENST00000568488 RTL5Q5HYW3 569 aaPredicted RBP21.26■□□□□ 0.99
CLK3-223ENST00000568488 FAM89AQ96GI7 184 aa21.26■□□□□ 0.99
CLK3-223ENST00000568488 ZNF280AP59817 542 aaPredicted RBP21.25■□□□□ 0.99
CLK3-223ENST00000568488 SF3B3Q15393 1217 aaKnown RBP21.25■□□□□ 0.99
CLK3-223ENST00000568488 PRAMEF18Q5VWM3 479 aa21.25■□□□□ 0.99
CLK3-223ENST00000568488 LRRC37AA6NMS7 1700 aa21.24■□□□□ 0.99
CLK3-223ENST00000568488 FKTNO75072 461 aa21.24■□□□□ 0.99
CLK3-223ENST00000568488 TM4SF4P48230 202 aa21.24■□□□□ 0.99
CLK3-223ENST00000568488 RSBN1LQ6PCB5 846 aaPredicted RBP21.24■□□□□ 0.99
CLK3-223ENST00000568488 PLEKHF1Q96S99 279 aa21.24■□□□□ 0.99
CLK3-223ENST00000568488 UFL1O94874 794 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 RPS8P62241 208 aaKnown RBP21.23■□□□□ 0.99
CLK3-223ENST00000568488 AGBL3Q8NEM8 1001 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 MYOZ2Q9NPC6 264 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 ANKIB1Q9P2G1 1089 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 MAPK8IP3Q9UPT6 1336 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 PAPPA2Q9BXP8 1791 aa21.23■□□□□ 0.99
CLK3-223ENST00000568488 USP17L8P0C7I0 530 aa21.22■□□□□ 0.99
CLK3-223ENST00000568488 ATP5J2-PTCD1G3V325 749 aa21.21■□□□□ 0.99
CLK3-223ENST00000568488 NOM1Q5C9Z4 860 aaKnown RBP21.21■□□□□ 0.99
CLK3-223ENST00000568488 R3HDMLQ9H3Y0 253 aa21.21■□□□□ 0.99
CLK3-223ENST00000568488 PITPNM2Q9BZ72 1349 aa21.21■□□□□ 0.99
CLK3-223ENST00000568488 SREBF2Q12772 1141 aa21.2■□□□□ 0.98
CLK3-223ENST00000568488 GGA1Q9UJY5 639 aa21.2■□□□□ 0.98
CLK3-223ENST00000568488 SCN9AQ15858 1988 aa21.19■□□□□ 0.98
CLK3-223ENST00000568488 DDX60Q8IY21 1712 aaKnown RBP21.19■□□□□ 0.98
CLK3-223ENST00000568488 POTEFA5A3E0 1075 aa21.19■□□□□ 0.98
CLK3-223ENST00000568488 PNNQ9H307 717 aaKnown RBP21.19■□□□□ 0.98
CLK3-223ENST00000568488 IRS4O14654 1257 aaPredicted RBP21.18■□□□□ 0.98
CLK3-223ENST00000568488 NF2P35240 595 aa21.18■□□□□ 0.98
CLK3-223ENST00000568488 ISCA1Q9BUE6 129 aa21.18■□□□□ 0.98
CLK3-223ENST00000568488 PODXL2Q9NZ53 605 aa21.18■□□□□ 0.98
CLK3-223ENST00000568488 TRIM17Q9Y577 477 aa21.18■□□□□ 0.98
CLK3-223ENST00000568488 RIPK4P57078 832 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 PRKG1Q13976 671 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 NBPF9Q3BBW0 867 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 ANKRD13DQ6ZTN6 518 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 PLBD2Q8NHP8 589 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 SEC31BQ9NQW1 1179 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.17■□□□□ 0.98
CLK3-223ENST00000568488 COL4A1P02462 1669 aa21.17■□□□□ 0.98
CLK3-223ENST00000568488 INTS3Q68E01 1043 aaKnown RBP21.16■□□□□ 0.98
CLK3-223ENST00000568488 GMLQ99445 158 aa21.16■□□□□ 0.98
CLK3-223ENST00000568488 CHPF2Q9P2E5 772 aa21.16■□□□□ 0.98
CLK3-223ENST00000568488 USP17L3A6NCW0 530 aa21.15■□□□□ 0.98
CLK3-223ENST00000568488 USP17L4A6NCW7 530 aa21.15■□□□□ 0.98
CLK3-223ENST00000568488 PTPN12Q05209 780 aaKnown RBP21.15■□□□□ 0.98
CLK3-223ENST00000568488 USP17L1Q7RTZ2 530 aa21.15■□□□□ 0.98
CLK3-223ENST00000568488 BABAM1Q9NWV8 329 aa21.15■□□□□ 0.98
CLK3-223ENST00000568488 KRT24Q2M2I5 525 aa21.14■□□□□ 0.97
CLK3-223ENST00000568488 CFHR5Q9BXR6 569 aa21.14■□□□□ 0.97
CLK3-223ENST00000568488 FXR1P51114 621 aaKnown RBP eCLIP21.13■□□□□ 0.97
CLK3-223ENST00000568488 OTOP1Q7RTM1 612 aa21.13■□□□□ 0.97
CLK3-223ENST00000568488 ARMC9Q7Z3E5 817 aa21.13■□□□□ 0.97
CLK3-223ENST00000568488 ALDH1A1P00352 501 aa21.12■□□□□ 0.97
CLK3-223ENST00000568488 PODNQ7Z5L7 613 aa21.12■□□□□ 0.97
CLK3-223ENST00000568488 OGFOD1Q8N543 542 aa21.12■□□□□ 0.97
CLK3-223ENST00000568488 FBXW7Q969H0 707 aa21.12■□□□□ 0.97
CLK3-223ENST00000568488 CCDC85AQ96PX6 553 aaPredicted RBP21.12■□□□□ 0.97
CLK3-223ENST00000568488 MKI67P46013 3256 aaKnown RBP21.12■□□□□ 0.97
CLK3-223ENST00000568488 ZNF609O15014 1411 aa21.12■□□□□ 0.97
CLK3-223ENST00000568488 HDGFL1Q5TGJ6 251 aa21.11■□□□□ 0.97
CLK3-223ENST00000568488 SPRYD7Q5W111 196 aa21.11■□□□□ 0.97
CLK3-223ENST00000568488 MXD3Q9BW11 206 aa21.11■□□□□ 0.97
CLK3-223ENST00000568488 LAS1LQ9Y4W2 734 aaKnown RBP21.11■□□□□ 0.97
CLK3-223ENST00000568488 WNT10BO00744 389 aa21.1■□□□□ 0.97
CLK3-223ENST00000568488 EN2P19622 333 aaPredicted RBP21.1■□□□□ 0.97
CLK3-223ENST00000568488 ANGEL1Q9UNK9 670 aaKnown RBP21.1■□□□□ 0.97
CLK3-223ENST00000568488 ATP2B4P23634 1241 aa21.09■□□□□ 0.97
CLK3-223ENST00000568488 CCDC152Q4G0S7 254 aa21.09■□□□□ 0.97
CLK3-223ENST00000568488 XDHP47989 1333 aa21.08■□□□□ 0.97
CLK3-223ENST00000568488 SASH1O94885 1247 aa21.08■□□□□ 0.97
CLK3-223ENST00000568488 HSP90B1P14625 803 aaKnown RBP21.08■□□□□ 0.97
CLK3-223ENST00000568488 IFNL1Q8IU54 200 aa21.08■□□□□ 0.97
CLK3-223ENST00000568488 SLC10A4Q96EP9 437 aa21.08■□□□□ 0.97
CLK3-223ENST00000568488 DBF4Q9UBU7 674 aaPredicted RBP21.08■□□□□ 0.97
CLK3-223ENST00000568488 FZD1Q9UP38 647 aa21.08■□□□□ 0.97
CLK3-223ENST00000568488 MANSC4A6NHS7 340 aaPredicted RBP21.07■□□□□ 0.96
CLK3-223ENST00000568488 INHBEP58166 350 aa21.07■□□□□ 0.96
CLK3-223ENST00000568488 LMOD3Q0VAK6 560 aa21.07■□□□□ 0.96
CLK3-223ENST00000568488 TRIM28Q13263 835 aaKnown RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms