RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 CCDC93Q567U6 631 aa11.52□□□□□ -0.57
VRK1-206ENST00000557222 WBP1LQ9NX94 342 aa11.52□□□□□ -0.57
VRK1-206ENST00000557222 BCORQ6W2J9 1755 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 PPP2R1AP30153 589 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 ALDH1B1P30837 517 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 COL13A1Q5TAT6 717 aaPredicted RBP11.51□□□□□ -0.57
VRK1-206ENST00000557222 SAMD7Q7Z3H4 446 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 RTKN2Q8IZC4 609 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 CCDC24Q8N4L8 307 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 COL11A2P13942 1736 aaPredicted RBP11.51□□□□□ -0.57
VRK1-206ENST00000557222 SLX4Q8IY92 1834 aa11.51□□□□□ -0.57
VRK1-206ENST00000557222 ARFGEF2Q9Y6D5 1785 aa11.5□□□□□ -0.57
VRK1-206ENST00000557222 FKBP4Q02790 459 aaKnown RBP eCLIP11.5□□□□□ -0.57
VRK1-206ENST00000557222 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
VRK1-206ENST00000557222 MCM10Q7L590 875 aa11.5□□□□□ -0.57
VRK1-206ENST00000557222 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
VRK1-206ENST00000557222 PNISRQ8TF01 805 aaKnown RBP11.5□□□□□ -0.57
VRK1-206ENST00000557222 TSR3Q9UJK0 312 aaKnown RBP11.5□□□□□ -0.57
VRK1-206ENST00000557222 HPS5Q9UPZ3 1129 aa11.5□□□□□ -0.57
VRK1-206ENST00000557222 NIP7Q9Y221 180 aaKnown RBP eCLIP11.5□□□□□ -0.57
VRK1-206ENST00000557222 ERVV-1B6SEH8 477 aa11.49□□□□□ -0.57
VRK1-206ENST00000557222 DDNO94850 711 aaPredicted RBP11.49□□□□□ -0.57
VRK1-206ENST00000557222 GRIPAP1Q4V328 841 aa11.49□□□□□ -0.57
VRK1-206ENST00000557222 CC2D2BQ6DHV5 1058 aa11.49□□□□□ -0.57
VRK1-206ENST00000557222 SMYD5Q6GMV2 418 aa11.49□□□□□ -0.57
VRK1-206ENST00000557222 LDHDQ86WU2 507 aa11.49□□□□□ -0.57
VRK1-206ENST00000557222 PRAMEF22A3QJZ6 481 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 NEFMP07197 916 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 CNGB1Q14028 1251 aaPredicted RBP11.48□□□□□ -0.57
VRK1-206ENST00000557222 RBM26Q5T8P6 1007 aaKnown RBP11.48□□□□□ -0.57
VRK1-206ENST00000557222 NYAP1Q6ZVC0 841 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 TNS4Q8IZW8 715 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 NYXQ9GZU5 481 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 SCN4AP35499 1836 aa11.48□□□□□ -0.57
VRK1-206ENST00000557222 PASKQ96RG2 1323 aa11.47□□□□□ -0.57
VRK1-206ENST00000557222 HSPA1AP0DMV8 641 aaKnown RBP11.47□□□□□ -0.57
VRK1-206ENST00000557222 HSPA1BP0DMV9 641 aaKnown RBP11.47□□□□□ -0.57
VRK1-206ENST00000557222 PIP4K2AP48426 406 aaPredicted RBP11.47□□□□□ -0.57
VRK1-206ENST00000557222 CRY2Q49AN0 593 aa11.47□□□□□ -0.57
VRK1-206ENST00000557222 PSMD1Q99460 953 aa11.47□□□□□ -0.57
VRK1-206ENST00000557222 PNNQ9H307 717 aaKnown RBP11.47□□□□□ -0.57
VRK1-206ENST00000557222 TAF1DQ9H5J8 278 aaPredicted RBP11.47□□□□□ -0.57
VRK1-206ENST00000557222 IBTKQ9P2D0 1353 aaPredicted RBP11.46□□□□□ -0.57
VRK1-206ENST00000557222 FZD9O00144 591 aa11.46□□□□□ -0.57
VRK1-206ENST00000557222 GTF2E1P29083 439 aaPredicted RBP11.46□□□□□ -0.57
VRK1-206ENST00000557222 DCTN1Q14203 1278 aa11.46□□□□□ -0.57
VRK1-206ENST00000557222 PNMA8AQ86V59 439 aaPredicted RBP11.46□□□□□ -0.57
VRK1-206ENST00000557222 HACL1Q9UJ83 578 aa11.46□□□□□ -0.57
VRK1-206ENST00000557222 RIC1Q4ADV7 1423 aa11.45□□□□□ -0.58
VRK1-206ENST00000557222 ERBB4Q15303 1308 aa11.45□□□□□ -0.58
VRK1-206ENST00000557222 MAP3K15Q6ZN16 1313 aa11.45□□□□□ -0.58
VRK1-206ENST00000557222 HOXA10P31260 410 aaPredicted RBP11.45□□□□□ -0.58
VRK1-206ENST00000557222 IARSP41252 1262 aaKnown RBP11.45□□□□□ -0.58
VRK1-206ENST00000557222 HLFQ16534 295 aa11.45□□□□□ -0.58
VRK1-206ENST00000557222 CNTNAP1P78357 1384 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 ITGBL1O95965 494 aaPredicted RBP11.44□□□□□ -0.58
VRK1-206ENST00000557222 PPP4CP60510 307 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 EIF4A1P60842 406 aaKnown RBP11.44□□□□□ -0.58
VRK1-206ENST00000557222 GPC2Q8N158 579 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 SYNE4Q8N205 404 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 JDP2Q8WYK2 163 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 PLEKHF1Q96S99 279 aa11.44□□□□□ -0.58
VRK1-206ENST00000557222 ZNF277Q9NRM2 450 aaPredicted RBP11.44□□□□□ -0.58
VRK1-206ENST00000557222 CACNA1SQ13698 1873 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 TMEM88BA6NKF7 163 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 EPHX2P34913 555 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 NFE2L2Q16236 605 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 KIF6Q6ZMV9 814 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 CRAMP1Q96RY5 1269 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 VPS33BQ9H267 617 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 BABAM1Q9NWV8 329 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 SNED1Q8TER0 1413 aa11.43□□□□□ -0.58
VRK1-206ENST00000557222 ZNF541Q9H0D2 1346 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 LAMB4A4D0S4 1761 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 PARP10Q53GL7 1025 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 PRDM10Q9NQV6 1147 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 MIS18AQ9NYP9 233 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 MKRN1Q9UHC7 482 aaKnown RBP11.42□□□□□ -0.58
VRK1-206ENST00000557222 ADGRG1Q9Y653 693 aa11.42□□□□□ -0.58
VRK1-206ENST00000557222 FAM177BA6PVY3 158 aa11.41□□□□□ -0.58
VRK1-206ENST00000557222 EIF6P56537 245 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 SWT1Q5T5J6 900 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 GIGYF2Q6Y7W6 1299 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 PPP1R42Q7Z4L9 355 aa11.41□□□□□ -0.58
VRK1-206ENST00000557222 ZNF34Q8IZ26 560 aa11.41□□□□□ -0.58
VRK1-206ENST00000557222 RPGRQ92834 1020 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 RBM17Q96I25 401 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
VRK1-206ENST00000557222 RNF123Q5XPI4 1314 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 NUP98P52948 1817 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 RASSF10A6NK89 507 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 FAM161AQ3B820 660 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 EAPPQ56P03 285 aaPredicted RBP11.4□□□□□ -0.58
VRK1-206ENST00000557222 SLC10A5Q5PT55 438 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 OLFM4Q6UX06 510 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 TTLL7Q6ZT98 887 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 CNTROBQ8N137 903 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 KDM3BQ7LBC6 1761 aa11.4□□□□□ -0.58
VRK1-206ENST00000557222 ABCC12Q96J65 1359 aa11.4□□□□□ -0.59
VRK1-206ENST00000557222 UBN2Q6ZU65 1347 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms