RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 GIGYF1O75420 1035 aaPredicted RBP5.53□□□□□ -1.52
CD44-226ENST00000527889 PPP2R1AP30153 589 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 TNNT2P45379 298 aaPredicted RBP5.53□□□□□ -1.52
CD44-226ENST00000527889 WNT7BP56706 349 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 PRR20EP86478 221 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 PRR20CP86479 221 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 PRR20DP86480 221 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 PRR20BP86481 221 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 PRR20AP86496 221 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 TAGLNQ01995 201 aaKnown RBP5.53□□□□□ -1.52
CD44-226ENST00000527889 RC3H1Q5TC82 1133 aaKnown RBP5.53□□□□□ -1.52
CD44-226ENST00000527889 HDGFL2Q7Z4V5 671 aaPredicted RBP5.53□□□□□ -1.52
CD44-226ENST00000527889 NLRP13Q86W25 1043 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 GLYCTKQ8IVS8 523 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 ZNF511Q8NB15 262 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 TPCN2Q8NHX9 752 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 ADGRL3Q9HAR2 1447 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 ALS2Q96Q42 1657 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 CRYBG1Q9Y4K1 1723 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 CPSF1Q10570 1443 aaKnown RBP5.52□□□□□ -1.53
CD44-226ENST00000527889 EDC4Q6P2E9 1401 aaKnown RBP5.52□□□□□ -1.53
CD44-226ENST00000527889 C21orf2O43822 256 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 HNRNPUQ00839 825 aaKnown RBP eCLIP5.52□□□□□ -1.53
CD44-226ENST00000527889 C4orf48Q5BLP8 95 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 SH3RF1Q7Z6J0 888 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.52□□□□□ -1.53
CD44-226ENST00000527889 TNS4Q8IZW8 715 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 GTF3C2Q8WUA4 911 aaPredicted RBP5.52□□□□□ -1.53
CD44-226ENST00000527889 FOXJ1Q92949 421 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 MRGPRX2Q96LB1 330 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 ASB16Q96NS5 453 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 CHMP4AQ9BY43 222 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 GGNBP2Q9H3C7 697 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 TERF2IPQ9NYB0 399 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 SEPT3Q9UH03 358 aa5.52□□□□□ -1.53
CD44-226ENST00000527889 DNMT3AQ9Y6K1 912 aaPredicted RBP5.52□□□□□ -1.53
CD44-226ENST00000527889 NRG2O14511 850 aaPredicted RBP5.51□□□□□ -1.53
CD44-226ENST00000527889 SIAH2O43255 324 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 LGR5O75473 907 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 RECKO95980 971 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 MAPK1P28482 360 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 WEE1P30291 646 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 ARHGAP4P98171 946 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 MORC1Q86VD1 984 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 PNISRQ8TF01 805 aaKnown RBP5.51□□□□□ -1.53
CD44-226ENST00000527889 TOR4AQ9NXH8 423 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 DCTN4Q9UJW0 460 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 RBM19Q9Y4C8 960 aaKnown RBP5.51□□□□□ -1.53
CD44-226ENST00000527889 NSD2O96028 1365 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 ABCA3Q99758 1704 aa5.51□□□□□ -1.53
CD44-226ENST00000527889 ANKARQ7Z5J8 1434 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 CACNA1FO60840 1977 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 PHRF1Q9P1Y6 1649 aaKnown RBP5.5□□□□□ -1.53
CD44-226ENST00000527889 FKBP4Q02790 459 aaKnown RBP eCLIP5.5□□□□□ -1.53
CD44-226ENST00000527889 COL19A1Q14993 1142 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 ERFEQ4G0M1 354 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 TAF7LQ5H9L4 462 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 CAPN12Q6ZSI9 719 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 PMFBP1Q8TBY8 1022 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 C8orf37Q96NL8 207 aa5.5□□□□□ -1.53
CD44-226ENST00000527889 COL3A1P02461 1466 aaPredicted RBP5.5□□□□□ -1.53
CD44-226ENST00000527889 ACEP12821 1306 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 USP6P35125 1406 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 BLMP54132 1417 aaPredicted RBP5.49□□□□□ -1.53
CD44-226ENST00000527889 LRP6O75581 1613 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 RGPD1P0DJD0 1748 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 MAGEB6P1A0A0J9YX57 407 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 ESPNB1AK53 854 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 M0R2N6 131 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 FYB1O15117 783 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 PSME1Q06323 249 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 SF3B2Q13435 895 aaKnown RBP5.49□□□□□ -1.53
CD44-226ENST00000527889 FKBP5Q13451 457 aaPredicted RBP5.49□□□□□ -1.53
CD44-226ENST00000527889 MTMR3Q13615 1198 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 MEX3CQ5U5Q3 659 aaKnown RBP5.49□□□□□ -1.53
CD44-226ENST00000527889 RNF20Q5VTR2 975 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 NME9Q86XW9 330 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 ZSCAN29Q8IWY8 852 aaPredicted RBP5.49□□□□□ -1.53
CD44-226ENST00000527889 EHBP1Q8NDI1 1231 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 HINFPQ9BQA5 517 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 MKNK1Q9BUB5 465 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 TLL2Q9Y6L7 1015 aa5.49□□□□□ -1.53
CD44-226ENST00000527889 EP400Q96L91 3159 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 POLR3AO14802 1390 aaPredicted RBP5.48□□□□□ -1.53
CD44-226ENST00000527889 J3QL48 77 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 SMPD1P17405 629 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 FBLN1P23142 703 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 USP4Q13107 963 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 RGL4Q8IZJ4 473 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 TSEN2Q8NCE0 465 aaKnown RBP5.48□□□□□ -1.53
CD44-226ENST00000527889 NGDNQ8NEJ9 315 aaKnown RBP5.48□□□□□ -1.53
CD44-226ENST00000527889 PURBQ96QR8 312 aaKnown RBP5.48□□□□□ -1.53
CD44-226ENST00000527889 PCDHB11Q9Y5F2 797 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 UTRNP46939 3433 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 OVOS2A0A0J9YW53 1432 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 OVOS2Q6IE36 1432 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 SSH2Q76I76 1423 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 TTC21BQ7Z4L5 1316 aa5.48□□□□□ -1.53
CD44-226ENST00000527889 BCL9LQ86UU0 1499 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 TMEM94Q12767 1356 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms