RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 PPP4R3BQ5MIZ7 849 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 IFIT1BQ5T764 474 aaKnown RBP18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 Q6ZUG5 572 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 TRIM47Q96LD4 638 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 FEZ1Q99689 392 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 MTHFSDQ2M296 383 aaKnown RBP18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 NPHP3Q7Z494 1330 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 VAMP4O75379 141 aa18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.94■□□□□ 0.62
PCDHA1-203ENST00000504120 STX8Q9UNK0 236 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 GOPCQ9HD26 462 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 INCENPQ9NQS7 918 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 MSH6P52701 1360 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 ZFYVE9O95405 1425 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 WDHD1O75717 1129 aaPredicted RBP18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 UBASH3AP57075 661 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 ST5P78524 1137 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 SPAG1Q07617 926 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 CEP85Q6P2H3 762 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 TRAF1Q13077 416 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 LRRC2Q9BYS8 371 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 TMX1Q9H3N1 280 aa18.93■□□□□ 0.62
PCDHA1-203ENST00000504120 TMCO5BA8MYB1 307 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 TSPY3P0CV98 308 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 TSPY8P0CW00 308 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 SLC39A6Q13433 755 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 ERMNQ8TAM6 284 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 CTNNBL1Q8WYA6 563 aaPredicted RBP18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 SOS1Q07889 1333 aaPredicted RBP18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 GNG11P61952 73 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 NMIQ13287 307 aaPredicted RBP18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 ANO6Q4KMQ2 910 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 PAG1Q9NWQ8 432 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 SLC9C2Q5TAH2 1124 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 TCEANC2Q96MN5 208 aa18.92■□□□□ 0.62
PCDHA1-203ENST00000504120 RRAGBQ5VZM2 374 aa18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 HOOK3Q86VS8 718 aa18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 C16orf71Q8IYS4 520 aaPredicted RBP18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 TBCAO75347 108 aaKnown RBP18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 HLTFQ14527 1009 aaKnown RBP eCLIP18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 IFI16Q16666 785 aaKnown RBP18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 SYCP3Q8IZU3 236 aa18.91■□□□□ 0.62
PCDHA1-203ENST00000504120 DYNC1I1O14576 645 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 SMC1AQ14683 1233 aaKnown RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 ZBTB40Q9NUA8 1239 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 CCDC172P0C7W6 258 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 NPATQ14207 1427 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 SPECC1Q5M775 1068 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 SMARCC1Q92922 1105 aaPredicted RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 ARHGEF5Q12774 1597 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 STAT6P42226 847 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 NOP2P46087 812 aaKnown RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 DACT1Q9NYF0 836 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 COL17A1Q9UMD9 1497 aaPredicted RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 NAA16Q6N069 864 aaPredicted RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 MICALCLQ6ZW33 695 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 SMC5Q8IY18 1101 aa18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 ZNF219Q9P2Y4 722 aaPredicted RBP18.9■□□□□ 0.62
PCDHA1-203ENST00000504120 PRC1O43663 620 aa18.89■□□□□ 0.62
PCDHA1-203ENST00000504120 GNAT2P19087 354 aa18.89■□□□□ 0.62
PCDHA1-203ENST00000504120 MACROD2A1Z1Q3 448 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 MAP3K5Q99683 1374 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 POLR3GO15318 223 aaPredicted RBP18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 AKR1B10O60218 316 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 JADE2Q9NQC1 790 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 BMS1Q14692 1282 aaKnown RBP18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 NLRP3Q96P20 1036 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 SETDB2Q96T68 719 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 RAD50Q92878 1312 aa18.89■□□□□ 0.61
PCDHA1-203ENST00000504120 RNF113AO15541 343 aaKnown RBP18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 CALM1P0DP23 149 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 CALM2P0DP24 149 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 CALM3P0DP25 149 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 CTNNA2P26232 953 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 DNM1Q05193 864 aaKnown RBP18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 FAM107BQ9H098 131 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 PA2G4Q9UQ80 394 aaKnown RBP18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 CYLC1P35663 651 aaPredicted RBP18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 AFMP43652 599 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 WDR78Q5VTH9 848 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 GCC2Q8IWJ2 1684 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 TSPYL6Q8N831 410 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 ADGBQ8N7X0 1667 aa18.88■□□□□ 0.61
PCDHA1-203ENST00000504120 SKILP12757 684 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 ATP6V1AP38606 617 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 INTS4Q96HW7 963 aaKnown RBP18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 BCCIPQ9P287 314 aaKnown RBP eCLIP18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 SAMM50Q9Y512 469 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 RLBP1P12271 317 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 SLC4A8Q2Y0W8 1093 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 CTR9Q6PD62 1173 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 PKNOX2Q96KN3 472 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 UTP14AQ9BVJ6 771 aaKnown RBP18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 ATP10AO60312 1499 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 MAGI3Q5TCQ9 1506 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 LIG1P18858 919 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 CKAP4Q07065 602 aaKnown RBP18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 ZRANB1Q9UGI0 708 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 SPTLC2O15270 562 aa18.87■□□□□ 0.61
PCDHA1-203ENST00000504120 IBSPP21815 317 aaPredicted RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms