RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PDE6BP35913 854 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 GRM2Q14416 872 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 HOMER1Q86YM7 354 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 WDR75Q8IWA0 830 aaKnown RBP6.79□□□□□ -1.32
VPS13A-207ENST00000419472 TRPM4Q8TD43 1214 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 ZNF516Q92618 1163 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 SHDQ96IW2 340 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 TMEM63CQ9P1W3 806 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 R3HCC1Q9Y3T6 440 aaKnown RBP6.79□□□□□ -1.32
VPS13A-207ENST00000419472 GIPC1O14908 333 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 S1PR4O95977 384 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 HIRAP54198 1017 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-207ENST00000419472 WNT7BP56706 349 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 MAP9Q49MG5 647 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 CYP2U1Q7Z449 544 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 RPS6KC1Q96S38 1066 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 CUX1P39880 1505 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 PRC1O43663 620 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 GADD45BO75293 160 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-207ENST00000419472 GRM5P41594 1212 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 ESCO1Q5FWF5 840 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 ADGRD1Q6QNK2 874 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 C3orf58Q8NDZ4 430 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 RSRP1Q9BUV0 290 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 NOC4LQ9BVI4 516 aaKnown RBP6.78□□□□□ -1.32
VPS13A-207ENST00000419472 ZFYVE28Q9HCC9 887 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 HOMER2Q9NSB8 354 aa6.78□□□□□ -1.32
VPS13A-207ENST00000419472 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-207ENST00000419472 TOP2BQ02880 1626 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 TXLNAP40222 546 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 SKOR1P84550 965 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 BIRC2Q13490 618 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 TEAD4Q15561 434 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 ARSHQ5FYA8 562 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 TMEM74Q96NL1 305 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 FEZ1Q99689 392 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 MAP4K5Q9Y4K4 846 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 NEFLP07196 543 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 FAM50AQ14320 339 aaKnown RBP6.77□□□□□ -1.33
VPS13A-207ENST00000419472 PCNX4Q63HM2 1172 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 FBXO41Q8TF61 875 aa6.77□□□□□ -1.33
VPS13A-207ENST00000419472 FGD5Q6ZNL6 1462 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 EREGO14944 169 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 HRO43593 1189 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 MICAL2O94851 1124 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 POU3F3P20264 500 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 ZNF438Q7Z4V0 828 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 SNX29Q8TEQ0 813 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 CD2APQ9Y5K6 639 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 HRH3Q9Y5N1 445 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 TLL2Q9Y6L7 1015 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 PAX3P23760 479 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 PBX2P40425 430 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 DDR2Q16832 855 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 CTC1Q2NKJ3 1217 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 BRDTQ58F21 947 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 DALRD3Q5D0E6 543 aaKnown RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 PPP1R26Q5T8A7 1209 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 C16orf86Q6ZW13 317 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 RELL1Q8IUW5 271 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 XAGE2Q96GT9 111 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 SRRTQ9BXP5 876 aaKnown RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 TYW1Q9NV66 732 aaKnown RBP6.76□□□□□ -1.33
VPS13A-207ENST00000419472 PFDN2Q9UHV9 154 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 MAPK8IP1Q9UQF2 711 aa6.76□□□□□ -1.33
VPS13A-207ENST00000419472 GOLGA8CPA6NN73 597 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 LRRC41Q15345 812 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 TAF7LQ5H9L4 462 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 ZNF280CQ8ND82 737 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 WNT2BQ93097 391 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 RHOVQ96L33 236 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 SRCIN1Q9C0H9 1055 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 STRIP2Q9ULQ0 834 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 PDPK1O15530 556 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 PHACTR2O75167 634 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 PPFIA4O75335 1185 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 GARTP22102 1010 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 PRPF40BQ6NWY9 871 aaKnown RBP6.75□□□□□ -1.33
VPS13A-207ENST00000419472 GLIS3Q8NEA6 775 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 MTRQ99707 1265 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 SCUBE2Q9NQ36 999 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 LATS2Q9NRM7 1088 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 ABCA10Q8WWZ4 1543 aa6.75□□□□□ -1.33
VPS13A-207ENST00000419472 ABCA5Q8WWZ7 1642 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 DIAPH1O60610 1272 aaKnown RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 VIL1P09327 827 aaKnown RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 C1orf53Q5VUE5 145 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 SPATC1Q76KD6 591 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 LRP10Q7Z4F1 713 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 CCAR1Q8IX12 1150 aaKnown RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 KDF1Q8NAX2 398 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 GOLM1Q8NBJ4 401 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 PLD4Q96BZ4 506 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 ESYT1Q9BSJ8 1104 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 NT5C1AQ9BXI3 368 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 TNKS2Q9H2K2 1166 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 CHRDQ9H2X0 955 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 BCCIPQ9P287 314 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 ATP8A1Q9Y2Q0 1164 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 PBRM1Q86U86 1689 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms