RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SASH3O75995 380 aa6.4□□□□□ -1.38
HMGB1-204ENST00000399489 PSAPP07602 524 aa6.4□□□□□ -1.38
HMGB1-204ENST00000399489 MSL1Q68DK7 614 aa6.4□□□□□ -1.38
HMGB1-204ENST00000399489 FMR1NBQ8N0W7 255 aaPredicted RBP6.4□□□□□ -1.38
HMGB1-204ENST00000399489 CMTR1Q8N1G2 835 aaKnown RBP6.4□□□□□ -1.38
HMGB1-204ENST00000399489 TRPM4Q8TD43 1214 aa6.4□□□□□ -1.38
HMGB1-204ENST00000399489 RTCBQ9Y3I0 505 aaKnown RBP6.4□□□□□ -1.38
HMGB1-204ENST00000399489 DYRK3O43781 588 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 TARSP26639 723 aaKnown RBP6.39□□□□□ -1.39
HMGB1-204ENST00000399489 NRLP54845 237 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 TREML1Q86YW5 311 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 DCAF11Q8TEB1 546 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 TTC9Q92623 222 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 NAGPAQ9UK23 515 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 RNF114Q9Y508 228 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 XYLBO75191 536 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 GHRHP01286 108 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 EIF2AK2P19525 551 aaKnown RBP6.39□□□□□ -1.39
HMGB1-204ENST00000399489 BRD2P25440 801 aaKnown RBP6.39□□□□□ -1.39
HMGB1-204ENST00000399489 PLAURQ03405 335 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 MBTPS1Q14703 1052 aa6.39□□□□□ -1.39
HMGB1-204ENST00000399489 SELPP16109 830 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 MLLT1Q03111 559 aaPredicted RBP6.38□□□□□ -1.39
HMGB1-204ENST00000399489 ELOAQ14241 798 aaKnown RBP6.38□□□□□ -1.39
HMGB1-204ENST00000399489 PERM1Q5SV97 790 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 RGL4Q8IZJ4 473 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 PRIMPOLQ96LW4 560 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 LPIN3Q9BQK8 851 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 TLR7Q9NYK1 1049 aaKnown RBP6.38□□□□□ -1.39
HMGB1-204ENST00000399489 ZFATQ9P243 1243 aa6.38□□□□□ -1.39
HMGB1-204ENST00000399489 PRMT3O60678 531 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 EGFRP00533 1210 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 H2AFB1P0C5Y9 115 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 H2AFB2P0C5Z0 115 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 PRSS36Q5K4E3 855 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 FBXO11Q86XK2 927 aa6.37□□□□□ -1.39
HMGB1-204ENST00000399489 SMG9Q9H0W8 520 aaKnown RBP6.37□□□□□ -1.39
HMGB1-204ENST00000399489 OPLAHO14841 1288 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 PTCD1O75127 700 aaKnown RBP6.36□□□□□ -1.39
HMGB1-204ENST00000399489 KRTAP1-1Q07627 177 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 FKBP5Q13451 457 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-204ENST00000399489 C16orf46Q6P387 395 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 TP53INP1Q96A56 240 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 COL26A1Q96A83 441 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 GRNP28799 593 aaKnown RBP6.36□□□□□ -1.39
HMGB1-204ENST00000399489 COX20Q5RI15 118 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 SHISA2Q6UWI4 295 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 HFE2Q6ZVN8 426 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 CACTIN-AS1Q8N1I8 211 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 PIK3R5Q8WYR1 880 aa6.36□□□□□ -1.39
HMGB1-204ENST00000399489 FNDC3AQ9Y2H6 1198 aaKnown RBP6.36□□□□□ -1.39
HMGB1-204ENST00000399489 LOC102724428A0A0B4J2F2 783 aa6.35□□□□□ -1.39
HMGB1-204ENST00000399489 ZBTB42B2RXF5 422 aa6.35□□□□□ -1.39
HMGB1-204ENST00000399489 SIK1P57059 783 aa6.35□□□□□ -1.39
HMGB1-204ENST00000399489 IGF2-ASQ6U949 168 aa6.35□□□□□ -1.39
HMGB1-204ENST00000399489 LRFN2Q9ULH4 789 aa6.35□□□□□ -1.39
HMGB1-204ENST00000399489 SOX18P35713 384 aa6.34□□□□□ -1.39
HMGB1-204ENST00000399489 NLRP13Q86W25 1043 aa6.34□□□□□ -1.39
HMGB1-204ENST00000399489 PLD4Q96BZ4 506 aa6.34□□□□□ -1.39
HMGB1-204ENST00000399489 CHMP4AQ9BY43 222 aa6.34□□□□□ -1.39
HMGB1-204ENST00000399489 SRA1Q9HD15 236 aaKnown RBP6.34□□□□□ -1.39
HMGB1-204ENST00000399489 USP20Q9Y2K6 914 aa6.34□□□□□ -1.39
HMGB1-204ENST00000399489 ATG7O95352 703 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 GRIK5Q16478 980 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 MAP4K3Q8IVH8 894 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 SPACA7Q96KW9 195 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 MUC3BQ9H195 1237 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 UBAP1LF5GYI3 381 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 MMP20O60882 483 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 ABTB2Q8N961 1025 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 WFDC12Q8WWY7 111 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 CXXC1Q9P0U4 656 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-204ENST00000399489 USP35Q9P2H5 1018 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 AMOTL2Q9Y2J4 779 aa6.33□□□□□ -1.4
HMGB1-204ENST00000399489 FAM177BA6PVY3 158 aa6.32□□□□□ -1.4
HMGB1-204ENST00000399489 PATL2C9JE40 543 aaKnown RBP6.32□□□□□ -1.4
HMGB1-204ENST00000399489 TTC39BQ5VTQ0 682 aaPredicted RBP6.32□□□□□ -1.4
HMGB1-204ENST00000399489 GDF6Q6KF10 455 aaPredicted RBP6.32□□□□□ -1.4
HMGB1-204ENST00000399489 NSUN5Q96P11 429 aaKnown RBP6.32□□□□□ -1.4
HMGB1-204ENST00000399489 ZMIZ1Q9ULJ6 1067 aa6.32□□□□□ -1.4
HMGB1-204ENST00000399489 J3QW42 95 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 HOXD8P13378 290 aaPredicted RBP6.31□□□□□ -1.4
HMGB1-204ENST00000399489 IREB2P48200 963 aaKnown RBP6.31□□□□□ -1.4
HMGB1-204ENST00000399489 HYAL2Q12891 473 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 ILDR2Q71H61 639 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 IL22RA1Q8N6P7 574 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 STK32AQ8WU08 396 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 MKNK1Q9BUB5 465 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 MRPL18Q9H0U6 180 aaKnown RBP6.31□□□□□ -1.4
HMGB1-204ENST00000399489 KCNMB2Q9Y691 235 aa6.31□□□□□ -1.4
HMGB1-204ENST00000399489 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-204ENST00000399489 PPP1R15AO75807 674 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-204ENST00000399489 OCLNQ16625 522 aa6.3□□□□□ -1.4
HMGB1-204ENST00000399489 ETFBKMTQ8IXQ9 262 aa6.3□□□□□ -1.4
HMGB1-204ENST00000399489 PBXIP1Q96AQ6 731 aa6.3□□□□□ -1.4
HMGB1-204ENST00000399489 SAP130Q9H0E3 1048 aa6.3□□□□□ -1.4
HMGB1-204ENST00000399489 AKTIPQ9H8T0 292 aa6.3□□□□□ -1.4
HMGB1-204ENST00000399489 SMNDC1O75940 238 aaKnown RBP eCLIP6.29□□□□□ -1.4
HMGB1-204ENST00000399489 RPLP1P05386 114 aaKnown RBP6.29□□□□□ -1.4
HMGB1-204ENST00000399489 SCNN1AP37088 669 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms