RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 LOC102724428A0A0B4J2F2 783 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 ZBTB39O15060 712 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 GHRHP01286 108 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 SIK1P57059 783 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 GRIK4Q16099 956 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 DMRTC2Q8IXT2 367 aaPredicted RBP7.65□□□□□ -1.18
USP48-202ENST00000374730 OR13H1Q8NG92 308 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 GPR152Q8TDT2 470 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 SMG9Q9H0W8 520 aaKnown RBP7.65□□□□□ -1.18
USP48-202ENST00000374730 RBSNQ9H1K0 784 aa7.65□□□□□ -1.18
USP48-202ENST00000374730 RPLP1P05386 114 aaKnown RBP7.64□□□□□ -1.19
USP48-202ENST00000374730 PDE12Q6L8Q7 609 aaKnown RBP7.64□□□□□ -1.19
USP48-202ENST00000374730 HFE2Q6ZVN8 426 aa7.64□□□□□ -1.19
USP48-202ENST00000374730 WFDC8Q8IUA0 241 aa7.64□□□□□ -1.19
USP48-202ENST00000374730 PLD4Q96BZ4 506 aa7.64□□□□□ -1.19
USP48-202ENST00000374730 LENG1Q96BZ8 264 aaPredicted RBP7.64□□□□□ -1.19
USP48-202ENST00000374730 NSUN5Q96P11 429 aaKnown RBP7.64□□□□□ -1.19
USP48-202ENST00000374730 TIMELESSQ9UNS1 1208 aa7.64□□□□□ -1.19
USP48-202ENST00000374730 LOC100996750A0A140TA64 210 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 FURINP09958 794 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 SELPP16109 830 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 NRG1Q02297 640 aaPredicted RBP7.63□□□□□ -1.19
USP48-202ENST00000374730 ADGRE1Q14246 886 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 KRTAP4-6Q9BYQ5 205 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 MTMR7Q9Y216 660 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 USTQ9Y2C2 406 aa7.63□□□□□ -1.19
USP48-202ENST00000374730 HYAL2Q12891 473 aa7.62□□□□□ -1.19
USP48-202ENST00000374730 FBXO11Q86XK2 927 aa7.62□□□□□ -1.19
USP48-202ENST00000374730 CACTIN-AS1Q8N1I8 211 aa7.62□□□□□ -1.19
USP48-202ENST00000374730 ABI2Q9NYB9 513 aaPredicted RBP7.62□□□□□ -1.19
USP48-202ENST00000374730 J3QW42 95 aa7.61□□□□□ -1.19
USP48-202ENST00000374730 KIF4AO95239 1232 aa7.61□□□□□ -1.19
USP48-202ENST00000374730 DOC2BQ14184 412 aa7.61□□□□□ -1.19
USP48-202ENST00000374730 MBTPS1Q14703 1052 aa7.61□□□□□ -1.19
USP48-202ENST00000374730 NOM1Q5C9Z4 860 aaKnown RBP7.61□□□□□ -1.19
USP48-202ENST00000374730 TTC39BQ5VTQ0 682 aaPredicted RBP7.61□□□□□ -1.19
USP48-202ENST00000374730 GTF3C2Q8WUA4 911 aaPredicted RBP7.61□□□□□ -1.19
USP48-202ENST00000374730 NUDT16Q96DE0 195 aaKnown RBP7.61□□□□□ -1.19
USP48-202ENST00000374730 SRA1Q9HD15 236 aaKnown RBP7.61□□□□□ -1.19
USP48-202ENST00000374730 CCDC88BA6NC98 1476 aa7.61□□□□□ -1.19
USP48-202ENST00000374730 PCSK2P16519 638 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 NPR3P17342 541 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 MPSTP25325 297 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 SCNN1AP37088 669 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 ALKBH2Q6NS38 261 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 XKR5Q6UX68 686 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 ATCAYQ86WG3 371 aa7.6□□□□□ -1.19
USP48-202ENST00000374730 MZF1P28698 734 aaPredicted RBP7.59□□□□□ -1.19
USP48-202ENST00000374730 EIF1AXP47813 144 aaKnown RBP7.59□□□□□ -1.19
USP48-202ENST00000374730 B4GALNT3Q6L9W6 998 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 PHLDB3Q6NSJ2 640 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 SHISA2Q6UWI4 295 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 TXNRD3Q86VQ6 643 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 EDEM1Q92611 657 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 SPACA7Q96KW9 195 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 ELP3Q9H9T3 547 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 TPSG1Q9NRR2 321 aa7.59□□□□□ -1.19
USP48-202ENST00000374730 LOC105371045A0A1W2PR82 267 aa7.58□□□□□ -1.2
USP48-202ENST00000374730 PDGFAP04085 211 aa7.58□□□□□ -1.2
USP48-202ENST00000374730 SF3B2Q13435 895 aaKnown RBP7.58□□□□□ -1.2
USP48-202ENST00000374730 RSPO4Q2I0M5 234 aaPredicted RBP7.58□□□□□ -1.2
USP48-202ENST00000374730 COL13A1Q5TAT6 717 aaPredicted RBP7.58□□□□□ -1.2
USP48-202ENST00000374730 ZNF438Q7Z4V0 828 aa7.58□□□□□ -1.2
USP48-202ENST00000374730 MAP4K3Q8IVH8 894 aa7.58□□□□□ -1.2
USP48-202ENST00000374730 DCAF11Q8TEB1 546 aa7.58□□□□□ -1.2
USP48-202ENST00000374730 DEAF1O75398 565 aaPredicted RBP7.57□□□□□ -1.2
USP48-202ENST00000374730 FAM13AO94988 1023 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 DNM1Q05193 864 aaKnown RBP7.57□□□□□ -1.2
USP48-202ENST00000374730 NKAPLQ5M9Q1 402 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 GDF6Q6KF10 455 aaPredicted RBP7.57□□□□□ -1.2
USP48-202ENST00000374730 IGF2-ASQ6U949 168 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 IL22RA1Q8N6P7 574 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 MUC3BQ9H195 1237 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 TMEM63CQ9P1W3 806 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 USP21Q9UK80 565 aa7.57□□□□□ -1.2
USP48-202ENST00000374730 DLL1O00548 723 aa7.56□□□□□ -1.2
USP48-202ENST00000374730 SMNDC1O75940 238 aaKnown RBP eCLIP7.56□□□□□ -1.2
USP48-202ENST00000374730 TRIM33Q9UPN9 1127 aa7.56□□□□□ -1.2
USP48-202ENST00000374730 CARNS1A5YM72 827 aa7.55□□□□□ -1.2
USP48-202ENST00000374730 CYP2E1P05181 493 aaPredicted RBP7.55□□□□□ -1.2
USP48-202ENST00000374730 ATP11AP98196 1134 aa7.55□□□□□ -1.2
USP48-202ENST00000374730 MTMR3Q13615 1198 aa7.55□□□□□ -1.2
USP48-202ENST00000374730 TTC16Q8NEE8 873 aa7.55□□□□□ -1.2
USP48-202ENST00000374730 USP5P45974 858 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 FKBP4Q02790 459 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP48-202ENST00000374730 CEP120Q8N960 986 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 SSBP4Q9BWG4 385 aaPredicted RBP7.54□□□□□ -1.2
USP48-202ENST00000374730 GGNBP2Q9H3C7 697 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 SEMA6BQ9H3T3 888 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 EGFL7Q9UHF1 273 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 ATAD2BQ9ULI0 1458 aa7.54□□□□□ -1.2
USP48-202ENST00000374730 DYRK3O43781 588 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 H2AFB1P0C5Y9 115 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 H2AFB2P0C5Z0 115 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 EHHADHQ08426 723 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 SETDB1Q15047 1291 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 C8orf34Q49A92 452 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 CEP135Q66GS9 1140 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 NCAPG2Q86XI2 1143 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 PMEPA1Q969W9 287 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms