RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 PDE3AQ14432 1141 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 GRIPAP1Q4V328 841 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 DEFB123Q8N688 67 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 DPF2Q92785 391 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 DCPSQ96C86 337 aaKnown RBP10.51□□□□□ -0.73
CD44-205ENST00000352818 SHISA4Q96DD7 197 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 CRBNQ96SW2 442 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 VPS33BQ9H267 617 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 MTMR10Q9NXD2 777 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 TRIM35Q9UPQ4 493 aa10.51□□□□□ -0.73
CD44-205ENST00000352818 NIP7Q9Y221 180 aaKnown RBP eCLIP10.51□□□□□ -0.73
CD44-205ENST00000352818 RRP7AQ9Y3A4 280 aaKnown RBP10.51□□□□□ -0.73
CD44-205ENST00000352818 PLIN1O60240 522 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 KIAA2012Q0VF49 1180 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 TNIP1Q15025 636 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 UBE2Q1Q7Z7E8 422 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 NUTM1Q86Y26 1132 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 CD99L2Q8TCZ2 262 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 GGA3Q9NZ52 723 aa10.5□□□□□ -0.73
CD44-205ENST00000352818 LAMA2P24043 3122 aaKnown RBP10.5□□□□□ -0.73
CD44-205ENST00000352818 POLR2AP24928 1970 aaKnown RBP10.5□□□□□ -0.73
CD44-205ENST00000352818 A0A1W2PPC1 479 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 NEFMP07197 916 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 HOXD11P31277 338 aaPredicted RBP10.49□□□□□ -0.73
CD44-205ENST00000352818 PLA2G5P39877 138 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 RARSP54136 660 aaKnown RBP10.49□□□□□ -0.73
CD44-205ENST00000352818 FKBP1BP68106 108 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 AAMPQ13685 434 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 NEUROD2Q15784 382 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 HLFQ16534 295 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 RBM26Q5T8P6 1007 aaKnown RBP10.49□□□□□ -0.73
CD44-205ENST00000352818 SULT6B1Q6IMI4 303 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 CRAMP1Q96RY5 1269 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 TMEM106CQ9BVX2 250 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 FANCIQ9NVI1 1328 aa10.49□□□□□ -0.73
CD44-205ENST00000352818 PSMD14O00487 310 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 ZBTB7BO15156 539 aaPredicted RBP10.48□□□□□ -0.73
CD44-205ENST00000352818 PRKAR2BP31323 418 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 CALD1Q05682 793 aaKnown RBP10.48□□□□□ -0.73
CD44-205ENST00000352818 LMOD3Q0VAK6 560 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 NFE2L2Q16236 605 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 C20orf194Q5TEA3 1177 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 SULF1Q8IWU6 871 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 DPF3Q92784 378 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 KCNQ5Q9NR82 932 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 SCAF8Q9UPN6 1271 aaKnown RBP10.48□□□□□ -0.73
CD44-205ENST00000352818 ATP6V0A2Q9Y487 856 aa10.48□□□□□ -0.73
CD44-205ENST00000352818 MYCP01106 439 aaPredicted RBP10.47□□□□□ -0.73
CD44-205ENST00000352818 RIPK4P57078 832 aa10.47□□□□□ -0.73
CD44-205ENST00000352818 GPR153Q6NV75 609 aa10.47□□□□□ -0.73
CD44-205ENST00000352818 RTL9Q8NET4 1388 aa10.47□□□□□ -0.73
CD44-205ENST00000352818 IGF2BP3O00425 579 aaKnown RBP eCLIP10.46□□□□□ -0.73
CD44-205ENST00000352818 KCNQ3O43525 872 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 BCAR3O75815 825 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 KIF4BQ2VIQ3 1234 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 PRAMEF18Q5VWM3 479 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 ZNF790Q6PG37 636 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 RPGRQ92834 1020 aaKnown RBP10.46□□□□□ -0.73
CD44-205ENST00000352818 ZNF428Q96B54 188 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 TEX13AQ9BXU3 409 aaPredicted RBP10.46□□□□□ -0.73
CD44-205ENST00000352818 EFCC1Q9HA90 598 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 STAP2Q9UGK3 403 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 RBM19Q9Y4C8 960 aaKnown RBP10.46□□□□□ -0.73
CD44-205ENST00000352818 USP16Q9Y5T5 823 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 PTCH2Q9Y6C5 1203 aa10.46□□□□□ -0.73
CD44-205ENST00000352818 LAMB4A4D0S4 1761 aa10.46□□□□□ -0.74
CD44-205ENST00000352818 DUOX1Q9NRD9 1551 aa10.45□□□□□ -0.74
CD44-205ENST00000352818 NBPF26B4DH59 902 aa10.45□□□□□ -0.74
CD44-205ENST00000352818 SREBF2Q12772 1141 aa10.45□□□□□ -0.74
CD44-205ENST00000352818 SLC4A8Q2Y0W8 1093 aa10.45□□□□□ -0.74
CD44-205ENST00000352818 ANGEL2Q5VTE6 544 aaKnown RBP10.45□□□□□ -0.74
CD44-205ENST00000352818 NBPF10Q6P3W6 841 aaKnown RBP10.45□□□□□ -0.74
CD44-205ENST00000352818 ZNF652Q9Y2D9 606 aa10.45□□□□□ -0.74
CD44-205ENST00000352818 RGL2O15211 777 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 MS4A1P11836 297 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 PTPN12Q05209 780 aaKnown RBP10.44□□□□□ -0.74
CD44-205ENST00000352818 CENPQQ7L2Z9 268 aaPredicted RBP10.44□□□□□ -0.74
CD44-205ENST00000352818 IFNL1Q8IU54 200 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 TTC5Q8N0Z6 440 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 ERO1AQ96HE7 468 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 RBM17Q96I25 401 aaKnown RBP10.44□□□□□ -0.74
CD44-205ENST00000352818 IFT57Q9NWB7 429 aa10.44□□□□□ -0.74
CD44-205ENST00000352818 CDH23Q9H251 3354 aa10.43□□□□□ -0.74
CD44-205ENST00000352818 ZNF853P0CG23 659 aa10.43□□□□□ -0.74
CD44-205ENST00000352818 MTHFSDQ2M296 383 aaKnown RBP10.43□□□□□ -0.74
CD44-205ENST00000352818 SPRYD7Q5W111 196 aa10.43□□□□□ -0.74
CD44-205ENST00000352818 DPP8Q6V1X1 898 aaPredicted RBP10.43□□□□□ -0.74
CD44-205ENST00000352818 ANKRD13DQ6ZTN6 518 aa10.43□□□□□ -0.74
CD44-205ENST00000352818 SUPT20HQ8NEM7 779 aa10.43□□□□□ -0.74
CD44-205ENST00000352818 ABCC4O15439 1325 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 UBN2Q6ZU65 1347 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 ALDH1A1P00352 501 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 HMOX1P09601 288 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 RPS12P25398 132 aaKnown RBP10.42□□□□□ -0.74
CD44-205ENST00000352818 GTF2E1P29083 439 aaPredicted RBP10.42□□□□□ -0.74
CD44-205ENST00000352818 GNAI1P63096 354 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 EXOSC9Q06265 439 aaKnown RBP10.42□□□□□ -0.74
CD44-205ENST00000352818 CRHR2Q13324 411 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 SCARF1Q14162 830 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 ALDH1L2Q3SY69 923 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms