RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 FOXO4P98177 505 aa20.23■□□□□ 0.83
FOXA1-201ENST00000250448 GIGYF2Q6Y7W6 1299 aaKnown RBP20.23■□□□□ 0.83
FOXA1-201ENST00000250448 CNTROBQ8N137 903 aa20.23■□□□□ 0.83
FOXA1-201ENST00000250448 LIMCH1Q9UPQ0 1083 aa20.23■□□□□ 0.83
FOXA1-201ENST00000250448 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.23■□□□□ 0.83
FOXA1-201ENST00000250448 THSD7AQ9UPZ6 1657 aa20.23■□□□□ 0.83
FOXA1-201ENST00000250448 RUFY3Q7L099 469 aa20.23■□□□□ 0.83
FOXA1-201ENST00000250448 SYT1P21579 422 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 IL6STP40189 918 aaPredicted RBP20.22■□□□□ 0.83
FOXA1-201ENST00000250448 G3BP1Q13283 466 aaKnown RBP eCLIP20.22■□□□□ 0.83
FOXA1-201ENST00000250448 RASEFQ8IZ41 740 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 LINC00116Q8NCU8 138 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 F13A1P00488 732 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 HCLS1P14317 486 aaPredicted RBP20.22■□□□□ 0.83
FOXA1-201ENST00000250448 PIBF1Q8WXW3 757 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 SMARCC1Q92922 1105 aaPredicted RBP20.22■□□□□ 0.83
FOXA1-201ENST00000250448 ATRNO75882 1429 aa20.22■□□□□ 0.83
FOXA1-201ENST00000250448 ADCY5O95622 1261 aa20.21■□□□□ 0.83
FOXA1-201ENST00000250448 EIF5P55010 431 aaKnown RBP20.21■□□□□ 0.83
FOXA1-201ENST00000250448 SMC3Q9UQE7 1217 aa20.21■□□□□ 0.83
FOXA1-201ENST00000250448 RFX5P48382 616 aaPredicted RBP20.21■□□□□ 0.83
FOXA1-201ENST00000250448 HSP90AB4PQ58FF6 505 aa20.21■□□□□ 0.83
FOXA1-201ENST00000250448 PTPN12Q05209 780 aaKnown RBP20.2■□□□□ 0.83
FOXA1-201ENST00000250448 RABL6Q3YEC7 729 aaPredicted RBP20.2■□□□□ 0.83
FOXA1-201ENST00000250448 MPNDQ8N594 471 aa20.2■□□□□ 0.83
FOXA1-201ENST00000250448 ZNF594Q96JF6 807 aaPredicted RBP20.2■□□□□ 0.83
FOXA1-201ENST00000250448 DNTTIP2Q5QJE6 756 aaKnown RBP20.2■□□□□ 0.82
FOXA1-201ENST00000250448 ATP6V1DQ9Y5K8 247 aa20.2■□□□□ 0.82
FOXA1-201ENST00000250448 FIBPO43427 364 aa20.2■□□□□ 0.82
FOXA1-201ENST00000250448 MYRIPQ8NFW9 859 aa20.2■□□□□ 0.82
FOXA1-201ENST00000250448 ZNF830Q96NB3 372 aaPredicted RBP20.2■□□□□ 0.82
FOXA1-201ENST00000250448 LARP6Q9BRS8 491 aaKnown RBP20.2■□□□□ 0.82
FOXA1-201ENST00000250448 CCDC8Q9H0W5 538 aaPredicted RBP20.2■□□□□ 0.82
FOXA1-201ENST00000250448 TPRNQ4KMQ1 711 aa20.19■□□□□ 0.82
FOXA1-201ENST00000250448 AACSQ86V21 672 aa20.19■□□□□ 0.82
FOXA1-201ENST00000250448 NLRP10Q86W26 655 aa20.19■□□□□ 0.82
FOXA1-201ENST00000250448 CLASRPQ8N2M8 674 aaKnown RBP20.19■□□□□ 0.82
FOXA1-201ENST00000250448 TLR7Q9NYK1 1049 aaKnown RBP20.19■□□□□ 0.82
FOXA1-201ENST00000250448 UBN2Q6ZU65 1347 aa20.18■□□□□ 0.82
FOXA1-201ENST00000250448 CWC27Q6UX04 472 aaKnown RBP20.18■□□□□ 0.82
FOXA1-201ENST00000250448 EAF2Q96CJ1 260 aaPredicted RBP20.18■□□□□ 0.82
FOXA1-201ENST00000250448 USP42Q9H9J4 1324 aaKnown RBP20.18■□□□□ 0.82
FOXA1-201ENST00000250448 LARGE1O95461 756 aa20.17■□□□□ 0.82
FOXA1-201ENST00000250448 NOLC1Q14978 699 aaKnown RBP eCLIP20.17■□□□□ 0.82
FOXA1-201ENST00000250448 BTAF1O14981 1849 aa20.17■□□□□ 0.82
FOXA1-201ENST00000250448 CASTP20810 708 aaKnown RBP20.17■□□□□ 0.82
FOXA1-201ENST00000250448 PRIMPOLQ96LW4 560 aa20.17■□□□□ 0.82
FOXA1-201ENST00000250448 TTC12Q9H892 705 aaPredicted RBP20.17■□□□□ 0.82
FOXA1-201ENST00000250448 NUP98P52948 1817 aa20.17■□□□□ 0.82
FOXA1-201ENST00000250448 FUCA2Q9BTY2 467 aa20.17■□□□□ 0.82
FOXA1-201ENST00000250448 ONECUT3O60422 494 aaPredicted RBP20.16■□□□□ 0.82
FOXA1-201ENST00000250448 KDM4AO75164 1064 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 CPA1P15085 419 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 TRMT112Q9UI30 125 aaKnown RBP20.16■□□□□ 0.82
FOXA1-201ENST00000250448 IFIT2P09913 472 aaKnown RBP20.16■□□□□ 0.82
FOXA1-201ENST00000250448 TFCP2Q12800 502 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 TRIM28Q13263 835 aaKnown RBP20.16■□□□□ 0.82
FOXA1-201ENST00000250448 ERC1Q8IUD2 1116 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 COPRSQ9NQ92 184 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 TTC41PQ6P2S7 1318 aa20.16■□□□□ 0.82
FOXA1-201ENST00000250448 CCDC83Q8IWF9 413 aa20.15■□□□□ 0.82
FOXA1-201ENST00000250448 ZBTB38Q8NAP3 1195 aaPredicted RBP20.15■□□□□ 0.82
FOXA1-201ENST00000250448 DIAPH3Q9NSV4 1193 aa20.15■□□□□ 0.82
FOXA1-201ENST00000250448 GLRX3O76003 335 aaKnown RBP20.15■□□□□ 0.82
FOXA1-201ENST00000250448 PCCAP05165 728 aaPredicted RBP20.15■□□□□ 0.82
FOXA1-201ENST00000250448 GJB2P29033 226 aa20.15■□□□□ 0.82
FOXA1-201ENST00000250448 MTMR6Q9Y217 621 aa20.15■□□□□ 0.82
FOXA1-201ENST00000250448 CAMTA2O94983 1202 aa20.14■□□□□ 0.82
FOXA1-201ENST00000250448 HMGN5P82970 282 aaKnown RBP20.14■□□□□ 0.82
FOXA1-201ENST00000250448 PUS3Q9BZE2 481 aaKnown RBP20.14■□□□□ 0.82
FOXA1-201ENST00000250448 CCNL1Q9UK58 526 aaPredicted RBP20.14■□□□□ 0.82
FOXA1-201ENST00000250448 LRRC24Q50LG9 513 aa20.14■□□□□ 0.81
FOXA1-201ENST00000250448 GIMAP6Q6P9H5 292 aa20.14■□□□□ 0.81
FOXA1-201ENST00000250448 RUFY2Q8WXA3 655 aa20.14■□□□□ 0.81
FOXA1-201ENST00000250448 SPTLC3Q9NUV7 552 aa20.14■□□□□ 0.81
FOXA1-201ENST00000250448 ERVV-1B6SEH8 477 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 DNM1Q05193 864 aaKnown RBP20.13■□□□□ 0.81
FOXA1-201ENST00000250448 VPS53Q5VIR6 699 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 AMIGO3Q86WK7 504 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 C17orf53Q8N3J3 647 aaPredicted RBP20.13■□□□□ 0.81
FOXA1-201ENST00000250448 COL15A1P39059 1388 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 HSP90AB3PQ58FF7 597 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 ZSCAN31Q96LW9 406 aaPredicted RBP20.13■□□□□ 0.81
FOXA1-201ENST00000250448 JAKMIP1Q96N16 626 aaKnown RBP20.13■□□□□ 0.81
FOXA1-201ENST00000250448 SH2B1Q9NRF2 756 aaPredicted RBP20.13■□□□□ 0.81
FOXA1-201ENST00000250448 PDRG1Q9NUG6 133 aa20.13■□□□□ 0.81
FOXA1-201ENST00000250448 PTH1RQ03431 593 aa20.12■□□□□ 0.81
FOXA1-201ENST00000250448 SUSD4Q5VX71 490 aa20.12■□□□□ 0.81
FOXA1-201ENST00000250448 ZNF34Q8IZ26 560 aa20.12■□□□□ 0.81
FOXA1-201ENST00000250448 ARID3AQ99856 593 aa20.12■□□□□ 0.81
FOXA1-201ENST00000250448 TM6SF1Q9BZW5 370 aa20.12■□□□□ 0.81
FOXA1-201ENST00000250448 IRS4O14654 1257 aaPredicted RBP20.11■□□□□ 0.81
FOXA1-201ENST00000250448 ADCK5Q3MIX3 580 aa20.11■□□□□ 0.81
FOXA1-201ENST00000250448 GTF2F1P35269 517 aaKnown RBP eCLIP20.11■□□□□ 0.81
FOXA1-201ENST00000250448 PRPF40BQ6NWY9 871 aaKnown RBP20.11■□□□□ 0.81
FOXA1-201ENST00000250448 BICDL1Q6ZP65 573 aa20.11■□□□□ 0.81
FOXA1-201ENST00000250448 ZSWIM6Q9HCJ5 1215 aa20.11■□□□□ 0.81
FOXA1-201ENST00000250448 CYP46A1Q9Y6A2 500 aa20.11■□□□□ 0.81
FOXA1-201ENST00000250448 COL5A3P25940 1745 aaPredicted RBP20.11■□□□□ 0.81
FOXA1-201ENST00000250448 NHSQ6T4R5 1651 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms