RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 AACSQ86V21 672 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 IMPACTQ9P2X3 320 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 FAN1Q9Y2M0 1017 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 NOC2LQ9Y3T9 749 aaKnown RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CTAGE15A4D2H0 777 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 EVI5O60447 810 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CTAGE8P0CG41 777 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SLC8A3P57103 927 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 DEUP1Q05D60 604 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CTAGE6Q86UF2 777 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CTAGE4Q8IX94 777 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 Q9H521 79 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 NOP2P46087 812 aaKnown RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 LRSAM1Q6UWE0 723 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 SLC4A2P04920 1241 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 NLRP6P59044 892 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CDC5LQ99459 802 aaKnown RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CLCN1P35523 988 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CABP4P57796 275 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 PPP1R2P3Q6NXS1 205 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 UHRF1BP1Q6BDS2 1440 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 STK10O94804 968 aaKnown RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 GOPCQ9HD26 462 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CWC25Q9NXE8 425 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 TBCAO75347 108 aaKnown RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 ZNF165P49910 485 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 RILPL1Q5EBL4 403 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 RTL9Q8NET4 1388 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 PPP2R1AP30153 589 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 UBE2Q2Q8WVN8 375 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 TACO1Q9BSH4 297 aaKnown RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 GNA11P29992 359 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 PDE6BP35913 854 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 NFE2L2Q16236 605 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 MIS12Q9H081 205 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC113Q9H0I3 377 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 ZNF213O14771 459 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CASQ2O14958 399 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-201ENST00000011700 HSP90AA5PQ58FG0 334 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 CAPZA3Q96KX2 299 aa6.88□□□□□ -1.31
VPS13D-201ENST00000011700 PIK3R4Q99570 1358 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 RPRD2Q5VT52 1461 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 BTBD11A6QL63 1104 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 CIB2O75838 187 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 GTF2A1P52655 376 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 PUS7Q96PZ0 661 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 NLRP2Q9NX02 1062 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 NPHP3Q7Z494 1330 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 HMOX1P09601 288 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 IFIT5Q13325 482 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 MTMR3Q13615 1198 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 SLMAPQ14BN4 828 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 FCHSD1Q86WN1 690 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 FBXW7Q969H0 707 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 MKNK2Q9HBH9 465 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 DKC1O60832 514 aaKnown RBP eCLIP6.87□□□□□ -1.319e-16■■■■■ 70.8
VPS13D-201ENST00000011700 LARSQ9P2J5 1176 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 DBF4Q9UBU7 674 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC88CQ9P219 2028 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 TTC41PQ6P2S7 1318 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 SYCE3A1L190 88 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 MUM1L1Q5H9M0 696 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 OTUD6BQ8N6M0 293 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 JAKMIP1Q96N16 626 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 NUP58Q9BVL2 599 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 PRC1O43663 620 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 SYCE1Q8N0S2 351 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 EIF2AQ9BY44 585 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 NINQ8N4C6 2090 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 TRIM37O94972 964 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 UBL4BQ8N7F7 174 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 RUNDC3BQ96NL0 473 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 PPP1R12CQ9BZL4 782 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 CACYBPQ9HB71 228 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 NOB1Q9ULX3 412 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 GIPC1O14908 333 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 APOBRQ0VD83 1088 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 MAIP1Q8WWC4 291 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 CALR3Q96L12 384 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 PPP1R9BQ96SB3 815 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 ZHX3Q9H4I2 956 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 ABCA10Q8WWZ4 1543 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 GABPB1Q06547 395 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 CALCOCO2Q13137 446 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 TDRD12Q587J7 1177 aaKnown RBP6.87□□□□□ -1.31
VPS13D-201ENST00000011700 TEKT1Q969V4 418 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 ANKRD36BQ8N2N9 1353 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 KIAA0586Q9BVV6 1533 aa6.87□□□□□ -1.31
VPS13D-201ENST00000011700 PANK1Q8TE04 598 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 SNX21Q969T3 373 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 SYNCQ9H7C4 482 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 MGEA5O60502 916 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 KRT13P13646 458 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC61Q9Y6R9 512 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 EIF3CLB5ME19 914 aaKnown RBP6.86□□□□□ -1.31
VPS13D-201ENST00000011700 ZBTB16Q05516 673 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 HOOK2Q96ED9 719 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 SPAG5Q96R06 1193 aa6.86□□□□□ -1.31
VPS13D-201ENST00000011700 EIF3CQ99613 913 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 148.6 ms