RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CLEC18BQ6UXF7 455 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 ZNF620Q6ZNG0 422 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 SVOPLQ8N434 492 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 ATG16L2Q8NAA4 619 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 CLEC18CQ8NCF0 446 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 IL20RAQ9UHF4 553 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 PTP4A3O75365 173 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 MRPL33O75394 65 aaKnown RBP26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 NDUFB2O95178 105 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 BAG2O95816 211 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 IFNGR1P15260 489 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 AGAP20933 346 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 EDNRAP25101 427 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 TAF11Q15544 211 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 XKRXQ6PP77 449 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 SMARCD3Q6STE5 483 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 NDEL1Q9GZM8 345 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 OPN3Q9H1Y3 402 aaPredicted RBP26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 PIGMQ9H3S5 423 aa26.25■■□□□ 1.79
LIMCH1-211ENST00000509638 A0A1W2PRG6 482 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 MCIDASD6RGH6 385 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 CGAP01215 116 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 CD8BP10966 210 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 SLC25A35Q3KQZ1 300 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 TFAP2EQ6VUC0 442 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 NHLRC1Q6VVB1 395 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 THSD4Q6ZMP0 1018 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 SLC35D2Q76EJ3 337 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 AAED1Q7RTV5 226 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 STK32CQ86UX6 486 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 LRRC75AQ8NAA5 344 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 APH1AQ96BI3 265 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 OR52D1Q9H346 318 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 RCE1Q9Y256 329 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 SPTAN1Q13813 2472 aaKnown RBP26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 H0YHG0 523 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 ANXA8P13928 327 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 GSTM3P21266 225 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 RPL4P36578 427 aaKnown RBP26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 SELENOPP49908 381 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 MELKQ14680 651 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 ANKRD34AQ69YU3 496 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 NIPAL3Q6P499 406 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 LUZP2Q86TE4 346 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 ZNF100Q8IYN0 542 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 LILRB4Q8NHJ6 448 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 SSC4DQ8WTU2 575 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 TXNDC15Q96J42 360 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 EMC6Q9BV81 110 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 GABARAPL1Q9H0R8 117 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 EGLN3Q9H6Z9 239 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 ZNF556Q9HAH1 456 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 PARPBPQ9NWS1 579 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 CDH10Q9Y6N8 788 aa26.24■■□□□ 1.79
LIMCH1-211ENST00000509638 WIPF3A6NGB9 483 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 AKAP8O43823 692 aaKnown RBP26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 SOX14O95416 240 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 OR3A2P47893 321 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 TOP3AQ13472 1001 aaPredicted RBP26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 FAHD1Q6P587 224 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 KIF18BQ86Y91 864 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 KATNB1Q9BVA0 655 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 UCK2Q9BZX2 261 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 ENKD1Q9H0I2 346 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 PLSCR4Q9NRQ2 329 aa26.23■■□□□ 1.79
LIMCH1-211ENST00000509638 DAP3P51398 398 aaKnown RBP26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 BIDP55957 195 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 CTXN1P60606 82 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 ACKR1Q16570 336 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 KLHL17Q6TDP4 642 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 CD300LDQ6UXZ3 194 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 RASSF6Q6ZTQ3 369 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 WDFY1Q8IWB7 410 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 CIB1Q99828 191 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 POLDIP3Q9BY77 421 aaKnown RBP26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 ADAM18Q9Y3Q7 739 aa26.22■■□□□ 1.79
LIMCH1-211ENST00000509638 NKX2-6A6NCS4 301 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 NPIPB13A6NJU9 1138 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 NPIPB4C9JG80 1138 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 PDLIM1O00151 329 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 MSTNO14793 375 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 IGHV3-9P01782 118 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 SAMD8Q96LT4 415 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 OR2M2Q96R28 347 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 GPX7Q96SL4 187 aaPredicted RBP26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 JKAMPQ9P055 326 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 PRSS50Q9UI38 385 aa26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 UTP20O75691 2785 aaKnown RBP26.21■■□□□ 1.79
LIMCH1-211ENST00000509638 SLC35F4A4IF30 521 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 ZNF432O94892 652 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 CLDN14O95500 239 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 BCL10O95999 233 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 IGHMP01871 453 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 ANPEPP15144 967 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 COX10Q12887 443 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 RPL13AP3Q6NVV1 102 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 TMEM123Q8N131 208 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 ZNF610Q8N9Z0 462 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 TSPAN32Q96QS1 320 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 PLA2G12AQ9BZM1 189 aa26.2■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms