RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W SKY1Q03656 742 aa6.82□□□□□ -1.32
PRP40YKL012W YDL121CQ07541 149 aa6.82□□□□□ -1.32
PRP40YKL012W RRP6Q12149 733 aaKnown RBP6.82□□□□□ -1.32
PRP40YKL012W YOR022CQ12204 715 aa6.82□□□□□ -1.32
PRP40YKL012W APL1P27351 700 aa6.82□□□□□ -1.32
PRP40YKL012W SAF1P38352 637 aa6.82□□□□□ -1.32
PRP40YKL012W RSC8P43609 557 aaKnown RBP6.82□□□□□ -1.32
PRP40YKL012W SLD3P53135 668 aa6.82□□□□□ -1.32
PRP40YKL012W SPC105P53148 917 aa6.82□□□□□ -1.32
PRP40YKL012W ENV11P53246 860 aa6.82□□□□□ -1.32
PRP40YKL012W MSC2Q03455 724 aa6.82□□□□□ -1.32
PRP40YKL012W RPN7Q06103 429 aaKnown RBP6.82□□□□□ -1.32
PRP40YKL012W RIB2Q12362 591 aaKnown RBP6.82□□□□□ -1.32
PRP40YKL012W RPS21AP0C0V8 87 aaKnown RBP6.81□□□□□ -1.32
PRP40YKL012W KIN2P13186 1147 aaKnown RBP6.81□□□□□ -1.32
PRP40YKL012W RPD3P32561 433 aa6.81□□□□□ -1.32
PRP40YKL012W YKR018CP36114 725 aa6.81□□□□□ -1.32
PRP40YKL012W RRP8P38961 392 aaKnown RBP6.81□□□□□ -1.32
PRP40YKL012W YFL052WP43551 465 aa6.81□□□□□ -1.32
PRP40YKL012W SIZ1Q04195 904 aa6.81□□□□□ -1.32
PRP40YKL012W HFI1Q12060 488 aa6.81□□□□□ -1.32
PRP40YKL012W HAL9Q12180 1030 aa6.81□□□□□ -1.32
PRP40YKL012W YDR215CQ12240 137 aa6.81□□□□□ -1.32
PRP40YKL012W APM4Q99186 491 aa6.81□□□□□ -1.32
PRP40YKL012W COX11P19516 300 aaKnown RBP6.8□□□□□ -1.32
PRP40YKL012W SRP101P32916 621 aa6.8□□□□□ -1.32
PRP40YKL012W YKL133CP36066 463 aa6.8□□□□□ -1.32
PRP40YKL012W PTC7P38797 343 aa6.8□□□□□ -1.32
PRP40YKL012W GTS1P40956 396 aa6.8□□□□□ -1.32
PRP40YKL012W PTA1Q01329 785 aaPredicted RBP6.8□□□□□ -1.32
PRP40YKL012W MLC2Q06580 163 aa6.8□□□□□ -1.32
PRP40YKL012W YPR027CQ12079 277 aa6.8□□□□□ -1.32
PRP40YKL012W Q0142Q9ZZW4 58 aa6.8□□□□□ -1.32
PRP40YKL012W HSF1P10961 833 aa6.8□□□□□ -1.32
PRP40YKL012W KCC4P25389 1037 aa6.8□□□□□ -1.32
PRP40YKL012W MNN4P36044 1178 aa6.8□□□□□ -1.32
PRP40YKL012W ZIP2P53061 704 aa6.8□□□□□ -1.32
PRP40YKL012W PUS2P53167 370 aa6.8□□□□□ -1.32
PRP40YKL012W YHM2Q04013 314 aa6.8□□□□□ -1.32
PRP40YKL012W CDA1Q06702 301 aa6.8□□□□□ -1.32
PRP40YKL012W RPS21BQ3E754 87 aaKnown RBP6.8□□□□□ -1.32
PRP40YKL012W YLR149CQ99296 730 aa6.8□□□□□ -1.32
PRP40YKL012W MSB1P21339 1137 aaKnown RBP6.79□□□□□ -1.32
PRP40YKL012W OAF3P36023 863 aa6.79□□□□□ -1.32
PRP40YKL012W RIM4P38741 713 aa6.79□□□□□ -1.32
PRP40YKL012W YGR012WP53206 393 aa6.79□□□□□ -1.32
PRP40YKL012W RSM24Q03976 319 aa6.79□□□□□ -1.32
PRP40YKL012W SSL1Q04673 461 aaPredicted RBP6.79□□□□□ -1.32
PRP40YKL012W PEX15Q08215 383 aa6.79□□□□□ -1.32
PRP40YKL012W YPL277CQ08989 487 aa6.79□□□□□ -1.32
PRP40YKL012W DCS2Q12123 353 aa6.79□□□□□ -1.32
PRP40YKL012W PGM1P33401 570 aaKnown RBP6.78□□□□□ -1.32
PRP40YKL012W FLR1P38124 548 aa6.78□□□□□ -1.32
PRP40YKL012W MAL31P38156 614 aa6.78□□□□□ -1.32
PRP40YKL012W SLN1P39928 1220 aaPredicted RBP6.78□□□□□ -1.32
PRP40YKL012W YIL108WP40483 696 aaKnown RBP6.78□□□□□ -1.32
PRP40YKL012W FBP1P09201 348 aa6.77□□□□□ -1.33
PRP40YKL012W YCK2P23292 546 aaKnown RBP6.77□□□□□ -1.33
PRP40YKL012W SER1P33330 395 aaKnown RBP6.77□□□□□ -1.33
PRP40YKL012W DUS1P53759 423 aaKnown RBP6.77□□□□□ -1.33
PRP40YKL012W NSI1Q12457 570 aa6.77□□□□□ -1.33
PRP40YKL012W PCL10P53124 433 aa6.77□□□□□ -1.33
PRP40YKL012W SSY1Q03770 852 aa6.77□□□□□ -1.33
PRP40YKL012W NKP1Q12493 238 aa6.77□□□□□ -1.33
PRP40YKL012W CHS2P14180 963 aa6.76□□□□□ -1.33
PRP40YKL012W SEC65P29478 273 aa6.76□□□□□ -1.33
PRP40YKL012W YKU70P32807 602 aa6.76□□□□□ -1.33
PRP40YKL012W POA1P38218 177 aa6.76□□□□□ -1.33
PRP40YKL012W PAP2P53632 584 aaKnown RBP6.76□□□□□ -1.33
PRP40YKL012W NSG2P53898 299 aa6.76□□□□□ -1.33
PRP40YKL012W YMR187CQ03236 431 aa6.76□□□□□ -1.33
PRP40YKL012W PHM7Q12252 991 aa6.76□□□□□ -1.33
PRP40YKL012W PTH2P34222 208 aa6.75□□□□□ -1.33
PRP40YKL012W TAT1P38085 619 aa6.75□□□□□ -1.33
PRP40YKL012W YHL041WP38730 149 aa6.75□□□□□ -1.33
PRP40YKL012W ZRG8P40021 1076 aa6.75□□□□□ -1.33
PRP40YKL012W TAN1P53072 289 aaPredicted RBP6.75□□□□□ -1.33
PRP40YKL012W SVL3Q03088 825 aaKnown RBP6.75□□□□□ -1.33
PRP40YKL012W ECM38Q05902 660 aaPredicted RBP6.75□□□□□ -1.33
PRP40YKL012W COQ2P32378 372 aa6.74□□□□□ -1.33
PRP40YKL012W YKL222CP35995 705 aa6.74□□□□□ -1.33
PRP40YKL012W FAT1P38225 669 aa6.74□□□□□ -1.33
PRP40YKL012W SSZ1P38788 538 aaKnown RBP6.74□□□□□ -1.33
PRP40YKL012W HIS6P40545 261 aa6.74□□□□□ -1.33
PRP40YKL012W YJR039WP47107 1121 aa6.74□□□□□ -1.33
PRP40YKL012W ADP1P25371 1049 aa6.74□□□□□ -1.33
PRP40YKL012W MRS6P32864 603 aaKnown RBP6.74□□□□□ -1.33
PRP40YKL012W BFA1P47113 574 aa6.74□□□□□ -1.33
PRP40YKL012W RNR4P49723 345 aaKnown RBP6.74□□□□□ -1.33
PRP40YKL012W PSP2P50109 593 aaKnown RBP6.74□□□□□ -1.33
PRP40YKL012W ARP4P80428 489 aa6.74□□□□□ -1.33
PRP40YKL012W NOP56Q12460 504 aaKnown RBP RIP-Chip data6.74□□□□□ -1.33not detected
PRP40YKL012W PFK1P16861 987 aaKnown RBP6.73□□□□□ -1.33
PRP40YKL012W CNM67P53865 581 aaKnown RBP6.73□□□□□ -1.33
PRP40YKL012W YLR122CQ12312 125 aa6.73□□□□□ -1.33
PRP40YKL012W SWI6P09959 803 aa6.72□□□□□ -1.33
PRP40YKL012W HCA4P20448 770 aaKnown RBP6.72□□□□□ -1.33
PRP40YKL012W TMA64Q04600 565 aaKnown RBP6.72□□□□□ -1.33
PRP40YKL012W VTS1Q08831 523 aaKnown RBP RIP-Chip data6.72□□□□□ -1.33not detected
PRP40YKL012W GCD1P09032 578 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 120.3 ms