RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	CDC34	P14682	295 aa		4.15	□□□□□ -1.74
CDC40	YDR364C	EFT1	P32324	842 aa	Known RBP	4.15	□□□□□ -1.74
CDC40	YDR364C	MTC3	P53077	123 aa		4.15	□□□□□ -1.74
CDC40	YDR364C	RIA1	P53893	1110 aa		4.15	□□□□□ -1.74
CDC40	YDR364C	YOL057W	Q08225	711 aa		4.15	□□□□□ -1.74
CDC40	YDR364C	THI4	P32318	326 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	STU2	P46675	888 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	YGL081W	P53156	320 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	TYW3	P53177	273 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	TMN2	Q04562	672 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	OPI10	Q08202	246 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	YOL073C	Q08232	322 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	YLR125W	Q12138	136 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	LAS17	Q12446	633 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	GCR1	P07261	785 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	ENA1	P13587	1091 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	SWE1	P32944	819 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	GRX7	P38068	203 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	SPF1	P39986	1215 aa	Known RBP	4.14	□□□□□ -1.75
CDC40	YDR364C	CHZ1	P40019	153 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC40	YDR364C	YEN1	P40028	759 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	YGR125W	P53273	1036 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	ENA2	Q01896	1091 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	MRL1	Q06815	381 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	YLR040C	Q07988	224 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	XYL2	Q07993	356 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	ENA5	Q12691	1091 aa		4.14	□□□□□ -1.75
CDC40	YDR364C	SPT7	P35177	1332 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	YKL069W	P36088	180 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	CRP1	P38845	465 aa	Known RBP	4.13	□□□□□ -1.75
CDC40	YDR364C	YAP1801	P38856	637 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	PNT1	P38969	423 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	BUL1	P48524	976 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	FLC1	Q08967	793 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	OSH2	Q12451	1283 aa		4.13	□□□□□ -1.75
CDC40	YDR364C	KTR4	P38131	464 aa		4.12	□□□□□ -1.75
CDC40	YDR364C	YGR053C	P53234	283 aa		4.12	□□□□□ -1.75
CDC40	YDR364C	TIF35	Q04067	274 aa	Known RBP	4.12	□□□□□ -1.75
CDC40	YDR364C	PDS5	Q04264	1277 aa		4.12	□□□□□ -1.75
CDC40	YDR364C	SPO75	Q07798	868 aa		4.12	□□□□□ -1.75
CDC40	YDR364C	GUP2	Q08929	609 aa		4.12	□□□□□ -1.75
CDC40	YDR364C	USO1	P25386	1790 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	GAL11	P19659	1081 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	RAD27	P26793	382 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	RER2	P35196	286 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	CUE2	P36075	443 aa	Known RBP	4.11	□□□□□ -1.75
CDC40	YDR364C	RSP5	P39940	809 aa	Known RBP	4.11	□□□□□ -1.75
CDC40	YDR364C	TPM2	P40414	161 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	URM1	P40554	99 aa	Predicted RBP	4.11	□□□□□ -1.75
CDC40	YDR364C	NCS6	P53088	359 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	YGR012W	P53206	393 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	YNR029C	P53729	429 aa	Known RBP	4.11	□□□□□ -1.75
CDC40	YDR364C	CDA1	Q06702	301 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	IRC10	Q08118	586 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	MCH5	Q08777	521 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	RTT10	Q08924	1013 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	OSW2	Q12202	724 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	NPC2	Q12408	173 aa		4.11	□□□□□ -1.75
CDC40	YDR364C	PSK1	P31374	1356 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	ERR1	P0CX10	437 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	ERR2	P0CX11	437 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	KAR4	P25583	335 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	YBR184W	P38299	523 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	SUL1	P38359	859 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	YHR020W	P38708	688 aa	Known RBP	4.1	□□□□□ -1.75
CDC40	YDR364C	UBP12	P39538	1254 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	STB4	P50104	949 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	DNM1	P54861	757 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	ADR1	P07248	1323 aa		4.1	□□□□□ -1.75
CDC40	YDR364C	SPE1	P08432	466 aa		4.09	□□□□□ -1.75
CDC40	YDR364C	HSP60	P19882	572 aa	Known RBP	4.09	□□□□□ -1.75
CDC40	YDR364C	SFP1	P32432	683 aa		4.09	□□□□□ -1.75
CDC40	YDR364C	DUT1	P33317	147 aa		4.09	□□□□□ -1.75
CDC40	YDR364C	MCM7	P38132	845 aa		4.09	□□□□□ -1.75
CDC40	YDR364C	ENP1	P38333	483 aa	Known RBP	4.09	□□□□□ -1.75
CDC40	YDR364C	OMS1	Q06668	471 aa		4.09	□□□□□ -1.75
CDC40	YDR364C	TMA46	Q12000	345 aa	Known RBP	4.09	□□□□□ -1.75
CDC40	YDR364C	NOP14	Q99207	810 aa	Known RBP	4.09	□□□□□ -1.75
CDC40	YDR364C	YML133C	Q03099	1374 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	YLL067C	Q07888	1374 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	YLL066C	Q99208	1374 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	ERG4	P25340	473 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	ARE1	P25628	610 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	PPH3	P32345	308 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	NOP2	P40991	618 aa	Known RBP	4.08	□□□□□ -1.76
CDC40	YDR364C	KRI1	P42846	591 aa	Known RBP	4.08	□□□□□ -1.76
CDC40	YDR364C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
CDC40	YDR364C	LGE1	Q02796	332 aa	Known RBP	4.08	□□□□□ -1.76
CDC40	YDR364C	SPP382	Q06411	708 aa	Predicted RBP	4.08	□□□□□ -1.76
CDC40	YDR364C	ACF2	Q12168	779 aa		4.08	□□□□□ -1.76
CDC40	YDR364C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.08	□□□□□ -1.76
CDC40	YDR364C	ATG19	P35193	415 aa		4.07	□□□□□ -1.76
CDC40	YDR364C	GGA2	P38817	585 aa	Known RBP	4.07	□□□□□ -1.76
CDC40	YDR364C	PMC1	P38929	1173 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC40	YDR364C	EAF1	Q06337	982 aa		4.07	□□□□□ -1.76
CDC40	YDR364C	YLL058W	Q12198	575 aa		4.07	□□□□□ -1.76
CDC40	YDR364C	CIT1	P00890	479 aa		4.06	□□□□□ -1.76
CDC40	YDR364C	CAN1	P04817	590 aa		4.06	□□□□□ -1.76
CDC40	YDR364C	HSF1	P10961	833 aa		4.06	□□□□□ -1.76
CDC40	YDR364C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms