RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W AGP1P25376 633 aa3.3□□□□□ -1.88
VPS41YDR080W LST4P34239 828 aa3.3□□□□□ -1.88
VPS41YDR080W RSB1Q08417 382 aa3.3□□□□□ -1.88
VPS41YDR080W VTS1Q08831 523 aaKnown RBP RIP-Chip data3.3□□□□□ -1.88not detected
VPS41YDR080W GIC1P38785 314 aa3.3□□□□□ -1.88
VPS41YDR080W PFD1P46988 109 aa3.3□□□□□ -1.88
VPS41YDR080W SVF1Q05515 481 aa3.3□□□□□ -1.88
VPS41YDR080W VAC8P39968 578 aa3.3□□□□□ -1.88
VPS41YDR080W RBA50Q04418 439 aa3.3□□□□□ -1.88
VPS41YDR080W SPP382Q06411 708 aaPredicted RBP3.3□□□□□ -1.88
VPS41YDR080W MDM38Q08179 573 aa3.3□□□□□ -1.88
VPS41YDR080W CDC20P26309 610 aa3.29□□□□□ -1.88
VPS41YDR080W DOM34P33309 386 aa3.29□□□□□ -1.88
VPS41YDR080W VPS62P53285 467 aa3.29□□□□□ -1.88
VPS41YDR080W YVH1Q02256 364 aaKnown RBP3.29□□□□□ -1.88
VPS41YDR080W HMI1Q12039 706 aa3.29□□□□□ -1.88
VPS41YDR080W HSP104P31539 908 aaKnown RBP3.29□□□□□ -1.88
VPS41YDR080W SER1P33330 395 aaKnown RBP3.29□□□□□ -1.88
VPS41YDR080W GIP4P39732 760 aa3.29□□□□□ -1.88
VPS41YDR080W BUL2Q03758 920 aaKnown RBP3.29□□□□□ -1.88
VPS41YDR080W HIM1Q06674 414 aa3.29□□□□□ -1.88
VPS41YDR080W SSF2Q12153 453 aaPredicted RBP3.29□□□□□ -1.88
VPS41YDR080W RRG1Q12167 365 aaPredicted RBP3.29□□□□□ -1.88
VPS41YDR080W NPP1P25353 742 aa3.28□□□□□ -1.88
VPS41YDR080W YAP1801P38856 637 aa3.28□□□□□ -1.88
VPS41YDR080W ENV11P53246 860 aa3.28□□□□□ -1.88
VPS41YDR080W SRT1Q03175 343 aa3.28□□□□□ -1.88
VPS41YDR080W CLU1Q03690 1277 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W SHE9Q04172 456 aa3.28□□□□□ -1.88
VPS41YDR080W FAL1Q12099 399 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W ADR1P07248 1323 aa3.28□□□□□ -1.88
VPS41YDR080W APL1P27351 700 aa3.28□□□□□ -1.88
VPS41YDR080W SBA1P28707 216 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W CDC12P32468 407 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W SPF1P39986 1215 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W TRM44Q02648 567 aaKnown RBP3.28□□□□□ -1.88
VPS41YDR080W RSM24Q03976 319 aa3.28□□□□□ -1.88
VPS41YDR080W AKL1P38080 1108 aaKnown RBP3.27□□□□□ -1.89
VPS41YDR080W FOL2P51601 243 aaKnown RBP3.27□□□□□ -1.89
VPS41YDR080W YAP6Q03935 383 aa3.27□□□□□ -1.89
VPS41YDR080W SPO20Q04359 397 aa3.27□□□□□ -1.89
VPS41YDR080W ADY3Q07732 790 aa3.27□□□□□ -1.89
VPS41YDR080W CLN2P20438 545 aa3.27□□□□□ -1.89
VPS41YDR080W PIN4P34217 668 aaKnown RBP RIP-Chip data3.27□□□□□ -1.89not detected
VPS41YDR080W MND2P40577 368 aa3.27□□□□□ -1.89
VPS41YDR080W SFB2P53953 876 aa3.27□□□□□ -1.89
VPS41YDR080W CDA1Q06702 301 aa3.27□□□□□ -1.89
VPS41YDR080W FLO1P32768 1537 aa3.27□□□□□ -1.89
VPS41YDR080W CTS1P29029 562 aa3.27□□□□□ -1.89
VPS41YDR080W MAD1P40957 749 aa3.27□□□□□ -1.89
VPS41YDR080W SNU71P53207 620 aaKnown RBP3.27□□□□□ -1.89
VPS41YDR080W YLL058WQ12198 575 aa3.27□□□□□ -1.89
VPS41YDR080W FBP1P09201 348 aa3.26□□□□□ -1.89
VPS41YDR080W HPR1P17629 752 aaKnown RBP3.26□□□□□ -1.89
VPS41YDR080W HBS1P32769 611 aaKnown RBP3.26□□□□□ -1.89
VPS41YDR080W ECM21P38167 1117 aaKnown RBP3.26□□□□□ -1.89
VPS41YDR080W YFL040WP43562 540 aa3.26□□□□□ -1.89
VPS41YDR080W GUS1P46655 708 aaKnown RBP RIP-Chip data3.26□□□□□ -1.89not detected
VPS41YDR080W SPT20P50875 604 aa3.26□□□□□ -1.89
VPS41YDR080W GTF1P53260 183 aaPredicted RBP3.26□□□□□ -1.89
VPS41YDR080W ALE1Q08548 619 aa3.26□□□□□ -1.89
VPS41YDR080W LAS17Q12446 633 aa3.26□□□□□ -1.89
VPS41YDR080W FRD1P32614 470 aaKnown RBP3.26□□□□□ -1.89
VPS41YDR080W NSE3Q05541 303 aa3.26□□□□□ -1.89
VPS41YDR080W EMC1P25574 760 aa3.25□□□□□ -1.89
VPS41YDR080W TSL1P38427 1098 aaKnown RBP3.25□□□□□ -1.89
VPS41YDR080W YKE2P52553 114 aa3.25□□□□□ -1.89
VPS41YDR080W YGL082WP53155 381 aa3.25□□□□□ -1.89
VPS41YDR080W GPB1Q08886 897 aa3.25□□□□□ -1.89
VPS41YDR080W PSF3Q12146 194 aa3.25□□□□□ -1.89
VPS41YDR080W SAC3P46674 1301 aa3.25□□□□□ -1.89
VPS41YDR080W ECM30Q06673 1274 aa3.25□□□□□ -1.89
VPS41YDR080W ACK1Q07622 623 aaPredicted RBP3.25□□□□□ -1.89
VPS41YDR080W YBR184WP38299 523 aa3.24□□□□□ -1.89
VPS41YDR080W MET12P46151 657 aa3.24□□□□□ -1.89
VPS41YDR080W SLI1P53304 468 aa3.24□□□□□ -1.89
VPS41YDR080W FMP30Q02883 468 aa3.24□□□□□ -1.89
VPS41YDR080W IOC4Q04213 475 aa3.24□□□□□ -1.89
VPS41YDR080W PAH1P32567 862 aa3.24□□□□□ -1.89
VPS41YDR080W SHM2P37291 469 aaKnown RBP3.24□□□□□ -1.89
VPS41YDR080W CHA4P43634 648 aa3.24□□□□□ -1.89
VPS41YDR080W YLR224WQ05947 369 aa3.24□□□□□ -1.89
VPS41YDR080W TPO1Q07824 586 aa3.24□□□□□ -1.89
VPS41YDR080W DUR1,2P32528 1835 aaKnown RBP3.24□□□□□ -1.89
VPS41YDR080W YLR358CO13565 187 aa3.24□□□□□ -1.89
VPS41YDR080W KIN2P13186 1147 aaKnown RBP3.24□□□□□ -1.89
VPS41YDR080W KRE2P27809 442 aa3.24□□□□□ -1.89
VPS41YDR080W STV1P37296 890 aa3.24□□□□□ -1.89
VPS41YDR080W AIM21P40563 679 aa3.24□□□□□ -1.89
VPS41YDR080W VPS4P52917 437 aa3.24□□□□□ -1.89
VPS41YDR080W CWC24P53769 259 aa3.24□□□□□ -1.89
VPS41YDR080W YNL050CP53952 270 aa3.24□□□□□ -1.89
VPS41YDR080W WHI4Q07655 649 aaKnown RBP3.24□□□□□ -1.89
VPS41YDR080W CBP1P07252 654 aa3.23□□□□□ -1.89
VPS41YDR080W CAF20P12962 161 aaKnown RBP3.23□□□□□ -1.89
VPS41YDR080W SLU7Q02775 382 aaKnown RBP3.23□□□□□ -1.89
VPS41YDR080W FUN30P31380 1131 aa3.23□□□□□ -1.89
VPS41YDR080W YHR020WP38708 688 aaKnown RBP3.23□□□□□ -1.89
VPS41YDR080W ZRG8P40021 1076 aa3.23□□□□□ -1.89
VPS41YDR080W YJR008WP47085 338 aa3.23□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms