RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 LINS1Q8NG48 757 aa15.65■□□□□ 0.1
CLN3-210ENST00000563874 MARF1Q9Y4F3 1742 aaKnown RBP15.65■□□□□ 0.1
CLN3-210ENST00000563874 HIP1O00291 1037 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 MYL6BP14649 208 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 LMOD2Q6P5Q4 547 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 CCDC9Q9Y3X0 531 aaKnown RBP15.64■□□□□ 0.09
CLN3-210ENST00000563874 NPHP4O75161 1426 aaPredicted RBP15.64■□□□□ 0.09
CLN3-210ENST00000563874 PSME1Q06323 249 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 LRRC2Q9BYS8 371 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 SCAND2PQ9GZW5 306 aaPredicted RBP15.64■□□□□ 0.09
CLN3-210ENST00000563874 DNAJC25Q9H1X3 360 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 PXDNQ92626 1479 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 ELP1O95163 1332 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 ATP2B3Q16720 1220 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 CCDC129Q6ZRS4 1044 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 RIC3Q7Z5B4 369 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 PGBD1Q96JS3 809 aa15.64■□□□□ 0.09
CLN3-210ENST00000563874 C16orf45Q96MC5 204 aaPredicted RBP15.64■□□□□ 0.09
CLN3-210ENST00000563874 PPFIA3O75145 1194 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 SLC39A6Q13433 755 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 ANKRD1Q15327 319 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 ESCO1Q5FWF5 840 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 EPHA10Q5JZY3 1008 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 SPDYE4A6NLX3 237 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 IGKV5-2P06315 115 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 TPM3P06753 285 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 HOMEZQ8IX15 550 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 SMAP1Q8IYB5 467 aaPredicted RBP15.63■□□□□ 0.09
CLN3-210ENST00000563874 ANKARQ7Z5J8 1434 aa15.63■□□□□ 0.09
CLN3-210ENST00000563874 NPHP3Q7Z494 1330 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 HSP90B1P14625 803 aaKnown RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 PIP4K2AP48426 406 aaPredicted RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 THEMISQ8N1K5 641 aaPredicted RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 BRF1Q92994 677 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 SEC62Q99442 399 aaKnown RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 MED1Q15648 1581 aaPredicted RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 TAF5LO75529 589 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 ZNF165P49910 485 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 CLSTN2Q9H4D0 955 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 ZHX1Q9UKY1 873 aaPredicted RBP15.62■□□□□ 0.09
CLN3-210ENST00000563874 HDAC5Q9UQL6 1122 aa15.62■□□□□ 0.09
CLN3-210ENST00000563874 MED23Q9ULK4 1368 aa15.61■□□□□ 0.09
CLN3-210ENST00000563874 DNAJC2Q99543 621 aaKnown RBP15.61■□□□□ 0.09
CLN3-210ENST00000563874 A0A087WWV3 80 aa15.61■□□□□ 0.09
CLN3-210ENST00000563874 DDX58O95786 925 aaKnown RBP15.61■□□□□ 0.09
CLN3-210ENST00000563874 BRD2P25440 801 aaKnown RBP15.61■□□□□ 0.09
CLN3-210ENST00000563874 PDCL2Q8N4E4 241 aa15.61■□□□□ 0.09
CLN3-210ENST00000563874 DDX19AQ9NUU7 478 aaKnown RBP15.61■□□□□ 0.09
CLN3-210ENST00000563874 COL15A1P39059 1388 aa15.61■□□□□ 0.09
CLN3-210ENST00000563874 KDM3BQ7LBC6 1761 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 H3BQV1 296 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 ZNF75DP51815 510 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 IFFO2Q5TF58 517 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 FTOQ9C0B1 505 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLN3-210ENST00000563874 LTN1O94822 1766 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 Q6ZUG5 572 aa15.6■□□□□ 0.09
CLN3-210ENST00000563874 PDIA6Q15084 440 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 AMOTQ4VCS5 1084 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 NEK1Q96PY6 1258 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 MYD88Q99836 296 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 DDX21Q9NR30 783 aaKnown RBP eCLIP15.59■□□□□ 0.09
CLN3-210ENST00000563874 SNRKQ9NRH2 765 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 DBNLQ9UJU6 430 aaKnown RBP15.59■□□□□ 0.09
CLN3-210ENST00000563874 U2AF2P26368 475 aaKnown RBP eCLIP15.59■□□□□ 0.09
CLN3-210ENST00000563874 ZSCAN25Q6NSZ9 544 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 GTF3C6Q969F1 213 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 NAP1L2Q9ULW6 460 aaPredicted RBP15.59■□□□□ 0.09
CLN3-210ENST00000563874 SLFNL1Q499Z3 407 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 RGPD2P0DJD1 1756 aa15.59■□□□□ 0.09
CLN3-210ENST00000563874 TFCP2Q12800 502 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 CCDC144BQ3MJ40 725 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 PLA2G4DQ86XP0 818 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 CCDC144CPQ8IYA2 1237 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 ANKRD24Q8TF21 1146 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 XAGE3Q8WTP9 111 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 HMG20BQ9P0W2 317 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 CLIP2Q9UDT6 1046 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 ARHGAP23Q9P227 1491 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 ZSCAN20P17040 1043 aaPredicted RBP15.58■□□□□ 0.08
CLN3-210ENST00000563874 RESTQ13127 1097 aa15.58■□□□□ 0.08
CLN3-210ENST00000563874 DDX46Q7L014 1031 aaKnown RBP15.58■□□□□ 0.08
CLN3-210ENST00000563874 CACTINQ8WUQ7 758 aaKnown RBP15.58■□□□□ 0.08
CLN3-210ENST00000563874 NEURL1BA8MQ27 555 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 GCP02774 474 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 NEXNQ0ZGT2 675 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 NAA30Q147X3 362 aaPredicted RBP15.57■□□□□ 0.08
CLN3-210ENST00000563874 ARID5BQ14865 1188 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 COPS6Q7L5N1 327 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 KCNH5Q8NCM2 988 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 FBXW7Q969H0 707 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 UTYO14607 1347 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 SLIT1O75093 1534 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 CYP21A2P08686 494 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 GCKRQ14397 625 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 TDRD7Q8NHU6 1098 aaKnown RBP15.57■□□□□ 0.08
CLN3-210ENST00000563874 AXIN2Q9Y2T1 843 aa15.57■□□□□ 0.08
CLN3-210ENST00000563874 RBM43Q6ZSC3 357 aaKnown RBP15.57■□□□□ 0.08
CLN3-210ENST00000563874 ERCC4Q92889 916 aaPredicted RBP15.57■□□□□ 0.08
CLN3-210ENST00000563874 HEG1Q9ULI3 1381 aa15.56■□□□□ 0.08
CLN3-210ENST00000563874 NFAT5O94916 1531 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms