RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 MORC1Q86VD1 984 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 IFNL2Q8IZJ0 200 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 OGFOD1Q8N543 542 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 FRAT1Q92837 279 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-216ENST00000523088 CALR3Q96L12 384 aaKnown RBP9.07□□□□□ -0.96
HDAC3-216ENST00000523088 TEX13AQ9BXU3 409 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-216ENST00000523088 TFCP2L1Q9NZI6 479 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 PALLDQ8WX93 1383 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 C4BP0C0L5 1744 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 DYNC1I1O14576 645 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 RAB11FIP3O75154 756 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 TPM3P06753 285 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 TCF3P15923 654 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 CASQ1P31415 396 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 PTGER2P43116 358 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 POU5F1Q01860 360 aaKnown RBP9.06□□□□□ -0.96
HDAC3-216ENST00000523088 ANKRD13BQ86YJ7 626 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 KCNV2Q8TDN2 545 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 CFAP53Q96M91 514 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 EYA1Q99502 592 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 LRRC4BQ9NT99 713 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 NPC1L1Q9UHC9 1359 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 UBR3Q6ZT12 1888 aa9.06□□□□□ -0.96
HDAC3-216ENST00000523088 ANKRD33BA6NCL7 494 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 RGL2O15211 777 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 CYP27B1O15528 508 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 MAP4K4O95819 1239 aaPredicted RBP9.05□□□□□ -0.96
HDAC3-216ENST00000523088 VDRP11473 427 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 PAX7P23759 505 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 PAX3P23760 479 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 EIF4A2Q14240 407 aaKnown RBP9.05□□□□□ -0.96
HDAC3-216ENST00000523088 ZNF827Q17R98 1081 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 PLEKHO1Q53GL0 409 aaPredicted RBP9.05□□□□□ -0.96
HDAC3-216ENST00000523088 DZIP3Q86Y13 1208 aaKnown RBP9.05□□□□□ -0.96
HDAC3-216ENST00000523088 TIGD1Q96MW7 591 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 SGIP1Q9BQI5 828 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 TMOD3Q9NYL9 352 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 SWAP70Q9UH65 585 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 SUN2Q9UH99 717 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 KIF7Q2M1P5 1343 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 PNPLA7Q6ZV29 1317 aa9.05□□□□□ -0.96
HDAC3-216ENST00000523088 KDRP35968 1356 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 VIRMAQ69YN4 1812 aaKnown RBP9.04□□□□□ -0.96
HDAC3-216ENST00000523088 CCDC196A0A1B0GTZ2 297 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 ERVV-2B6SEH9 535 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 PHKG2P15735 406 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 ABCD1P33897 745 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 FLT3P36888 993 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 HMGN5P82970 282 aaKnown RBP9.04□□□□□ -0.96
HDAC3-216ENST00000523088 IRF5Q13568 498 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 TSR1Q2NL82 804 aaKnown RBP9.04□□□□□ -0.96
HDAC3-216ENST00000523088 MPRIPQ6WCQ1 1025 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 RETREG2Q8NC44 543 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 SREK1Q8WXA9 508 aaKnown RBP9.04□□□□□ -0.96
HDAC3-216ENST00000523088 AGBL1Q96MI9 1066 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 ATF5Q9Y2D1 282 aaPredicted RBP9.04□□□□□ -0.96
HDAC3-216ENST00000523088 SCN11AQ9UI33 1791 aa9.04□□□□□ -0.96
HDAC3-216ENST00000523088 CICQ96RK0 1608 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-216ENST00000523088 CT47B1P0C2W7 299 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-216ENST00000523088 BDNFP23560 247 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 C1orf141Q5JVX7 400 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 LRCH2Q5VUJ6 765 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 ICE2Q659A1 982 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 DCAF5Q96JK2 942 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 AK7Q96M32 723 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 AGAP3Q96P47 875 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 ARPC5LQ9BPX5 153 aa9.03□□□□□ -0.96
HDAC3-216ENST00000523088 CCDC189A1A4V9 331 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 ANKRD18BA2A2Z9 1011 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 CCP110O43303 1012 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 MAGEA8P43361 318 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 C4orf46Q504U0 113 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 KLHL23Q8NBE8 558 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 SYT17Q9BSW7 474 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 FHDC1Q9C0D6 1143 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-216ENST00000523088 PDGFDQ9GZP0 370 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-216ENST00000523088 CALCOCO1Q9P1Z2 691 aa9.02□□□□□ -0.97
HDAC3-216ENST00000523088 COL5A3P25940 1745 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-216ENST00000523088 LOC102724428A0A0B4J2F2 783 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 CFAP69A5D8W1 941 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 PES1O00541 588 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 HMMRO75330 724 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 YY1P25490 414 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 GTF2A1P52655 376 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 SIK1P57059 783 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 PPP4CP60510 307 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 SARNPP82979 210 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 MKRN3Q13064 507 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 ACRBPQ8NEB7 543 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 PIGBQ92521 554 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 POLR3CQ9BUI4 534 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 GNL3LQ9NVN8 582 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 CHCHD3Q9NX63 227 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 CGNQ9P2M7 1197 aaKnown RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 FBXO9Q9UK97 447 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-216ENST00000523088 PDZRN3Q9UPQ7 1066 aa9.01□□□□□ -0.97
HDAC3-216ENST00000523088 CCDC194A0A1B0GVG4 234 aa9□□□□□ -0.97
HDAC3-216ENST00000523088 TRAK2O60296 914 aa9□□□□□ -0.97
HDAC3-216ENST00000523088 GUCY2CP25092 1073 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms