RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 SLF2Q8IX21 1173 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 PDCL2Q8N4E4 241 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 FOXD4L4Q8WXT5 416 aaPredicted RBP5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 KIF1BPQ96EK5 621 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 TM6SF1Q9BZW5 370 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 NSFL1CQ9UNZ2 370 aaKnown RBP5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 EXOC6BQ9Y2D4 811 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 TTC41PQ6P2S7 1318 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 CCDC171Q6TFL3 1326 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 USP31Q70CQ4 1352 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 MAP3K5Q99683 1374 aa5.92□□□□□ -1.46
HMGB3P16-201ENST00000508037 AK9Q5TCS8 1911 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 OVOS2A0A0J9YW53 1432 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 OVOS2Q6IE36 1432 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 SETD1AO15047 1707 aaKnown RBP5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 SGSM2O43147 1006 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 GLRX3O76003 335 aaKnown RBP5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 ZKSCAN1P17029 563 aaPredicted RBP5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 PSMA5P28066 241 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 FLIIQ13045 1269 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 ANKRD1Q15327 319 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 VPS53Q5VIR6 699 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 TAF3Q5VWG9 929 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 MCM10Q7L590 875 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 ERC1Q8IUD2 1116 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 SSH3Q8TE77 659 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 FEZ1Q99689 392 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 USP42Q9H9J4 1324 aaKnown RBP5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 SBNO1A3KN83 1393 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 FLT4P35916 1363 aa5.91□□□□□ -1.46
HMGB3P16-201ENST00000508037 CACNA1FO60840 1977 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 GOLGA6L4A6NEF3 574 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 GNAT3A8MTJ3 354 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 NEMFO60524 1076 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 KIF20AO95235 890 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 HOXB7P09629 217 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 HCLS1P14317 486 aaPredicted RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 FBLN1P23142 703 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 KRT85P78386 507 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 DMTNQ08495 405 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 DHX8Q14562 1220 aaKnown RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 IFFO2Q5TF58 517 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 RNF20Q5VTR2 975 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 FBXO31Q5XUX0 539 aaPredicted RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 NOL8Q76FK4 1167 aaKnown RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 KIAA1524Q8TCG1 905 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 FAM200AQ8TCP9 573 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 TTC14Q96N46 770 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 UPF3BQ9BZI7 483 aaKnown RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 SCAND2PQ9GZW5 306 aaPredicted RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 DDX19AQ9NUU7 478 aaKnown RBP5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 PRDM4Q9UKN5 801 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 PALD1Q9ULE6 856 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 CNPY2Q9Y2B0 182 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 PAXBP1Q9Y5B6 917 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 SNX14Q9Y5W7 946 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 CYP46A1Q9Y6A2 500 aa5.9□□□□□ -1.46
HMGB3P16-201ENST00000508037 ELP1O95163 1332 aa5.9□□□□□ -1.47
HMGB3P16-201ENST00000508037 RGPD1P0DJD0 1748 aa5.9□□□□□ -1.47
HMGB3P16-201ENST00000508037 KDRP35968 1356 aa5.9□□□□□ -1.47
HMGB3P16-201ENST00000508037 N4BP2Q86UW6 1770 aaPredicted RBP5.9□□□□□ -1.47
HMGB3P16-201ENST00000508037 USP6P35125 1406 aa5.9□□□□□ -1.47
HMGB3P16-201ENST00000508037 NALCNQ8IZF0 1738 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 RCCD1A6NED2 376 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 F6X3S4 739 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 GADD45BO75293 160 aaPredicted RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 SURF6O75683 361 aaKnown RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 SYT1P21579 422 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 AK2P54819 239 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 MAP3K11Q16584 847 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 KRT24Q2M2I5 525 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 TXNDC2Q86VQ3 553 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 RHPN1Q8TCX5 695 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 KCNB2Q92953 911 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 CHMP4CQ96CF2 233 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 LSG1Q9H089 658 aaKnown RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 ESF1Q9H501 851 aaKnown RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 PDRG1Q9NUG6 133 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 LRRFIP2Q9Y608 721 aaKnown RBP5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 TUBGCP6Q96RT7 1819 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 ADGRL3Q9HAR2 1447 aa5.89□□□□□ -1.47
HMGB3P16-201ENST00000508037 PNMA6EA0A0J9YXQ4 647 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 SMTNL1A8MU46 457 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 KIF2AO00139 706 aaPredicted RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 GPR37O15354 613 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 CTIFO43310 598 aaKnown RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 FIBPO43427 364 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 ITGBL1O95965 494 aaPredicted RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 CASTP20810 708 aaKnown RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 CDC25BP30305 580 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 AMPHP49418 695 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 FAM193AP78312 1265 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 KCNC4Q03721 635 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 OS9Q13438 667 aaPredicted RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 TAF7Q15545 349 aaPredicted RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 MTHFSDQ2M296 383 aaKnown RBP5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 G2E3Q7L622 706 aa5.88□□□□□ -1.47
HMGB3P16-201ENST00000508037 CLASRPQ8N2M8 674 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms