RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 CUEDC1Q9NWM3 386 aaPredicted RBP7.46□□□□□ -1.22
VPS41-211ENST00000466017 HRH3Q9Y5N1 445 aa7.46□□□□□ -1.22
VPS41-211ENST00000466017 TULP4Q9NRJ4 1543 aa7.46□□□□□ -1.22
VPS41-211ENST00000466017 NWD1Q149M9 1564 aa7.46□□□□□ -1.22
VPS41-211ENST00000466017 SRPK2P78362 688 aaKnown RBP7.45□□□□□ -1.22
VPS41-211ENST00000466017 NUDT16Q96DE0 195 aaKnown RBP7.45□□□□□ -1.22
VPS41-211ENST00000466017 ETNK1Q9HBU6 452 aa7.45□□□□□ -1.22
VPS41-211ENST00000466017 TERF2IPQ9NYB0 399 aa7.45□□□□□ -1.22
VPS41-211ENST00000466017 KNSTRNQ9Y448 316 aa7.45□□□□□ -1.22
VPS41-211ENST00000466017 ANKRD36BQ8N2N9 1353 aa7.45□□□□□ -1.22
VPS41-211ENST00000466017 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.44□□□□□ -1.22
VPS41-211ENST00000466017 NKTRP30414 1462 aaKnown RBP7.44□□□□□ -1.22
VPS41-211ENST00000466017 STRCQ7RTU9 1775 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 SLC35F4A4IF30 521 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 SKIP12755 728 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 RNF144AP50876 292 aaPredicted RBP7.44□□□□□ -1.22
VPS41-211ENST00000466017 SCNN1DP51172 638 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 POU4F2Q12837 409 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 SAFB2Q14151 953 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS41-211ENST00000466017 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.44□□□□□ -1.22
VPS41-211ENST00000466017 POLR3GLQ9BT43 218 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 GRIP2Q9C0E4 1043 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 C19orf44Q9H6X5 657 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 PCDHGA11Q9Y5H2 935 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 BRD4O60885 1362 aaPredicted RBP7.44□□□□□ -1.22
VPS41-211ENST00000466017 ANKARQ7Z5J8 1434 aa7.44□□□□□ -1.22
VPS41-211ENST00000466017 A6NJR5 290 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 GMPRP36959 345 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 CENPCQ03188 943 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 HDGFL2Q7Z4V5 671 aaPredicted RBP7.43□□□□□ -1.22
VPS41-211ENST00000466017 CCDC155Q8N6L0 562 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 GLMNQ92990 594 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 XAGE2Q96GT9 111 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 CABP1Q9NZU7 370 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 CPSF1Q10570 1443 aaKnown RBP7.43□□□□□ -1.22
VPS41-211ENST00000466017 ATP7BP35670 1465 aa7.43□□□□□ -1.22
VPS41-211ENST00000466017 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
VPS41-211ENST00000466017 SOX11P35716 441 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 CLN3Q13286 438 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 NCOA4Q13772 614 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 TMC1Q8TDI8 760 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 CNKSR1Q969H4 720 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 GTF3C3Q9Y5Q9 886 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 USP3Q9Y6I4 520 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 PRR36Q9H6K5 1346 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 NSD2O96028 1365 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 PARD3Q8TEW0 1356 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 ADGRL3Q9HAR2 1447 aa7.42□□□□□ -1.22
VPS41-211ENST00000466017 TMEM229AB2RXF0 380 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 ZBTB7BO15156 539 aaPredicted RBP7.41□□□□□ -1.22
VPS41-211ENST00000466017 USP4Q13107 963 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 CYP2U1Q7Z449 544 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 FHDC1Q9C0D6 1143 aaPredicted RBP7.41□□□□□ -1.22
VPS41-211ENST00000466017 KIAA1024Q9UPX6 916 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 CGNL1Q0VF96 1302 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 DCCP43146 1447 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 CD163L1Q9NR16 1453 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 MYOM1P52179 1685 aa7.41□□□□□ -1.22
VPS41-211ENST00000466017 GNRH1P01148 92 aa7.4□□□□□ -1.22
VPS41-211ENST00000466017 LYSMD3Q7Z3D4 306 aa7.4□□□□□ -1.22
VPS41-211ENST00000466017 ESYT1Q9BSJ8 1104 aa7.4□□□□□ -1.22
VPS41-211ENST00000466017 TFIP11Q9UBB9 837 aaKnown RBP7.4□□□□□ -1.22
VPS41-211ENST00000466017 MYBBP1AQ9BQG0 1328 aaKnown RBP7.4□□□□□ -1.22
VPS41-211ENST00000466017 POLR3AO14802 1390 aaPredicted RBP7.4□□□□□ -1.22
VPS41-211ENST00000466017 CDC42BPGQ6DT37 1551 aa7.4□□□□□ -1.22
VPS41-211ENST00000466017 USP32Q8NFA0 1604 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 PPIP5K1Q6PFW1 1433 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 A0A1W2PP64 1363 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 USP17L5A8MUK1 530 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 FYB1O15117 783 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 MYCP01106 439 aaPredicted RBP7.39□□□□□ -1.23
VPS41-211ENST00000466017 PHKA2P46019 1235 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 KRT76Q01546 638 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 MAP7D1Q3KQU3 841 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 NLRP13Q86W25 1043 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 CCDC125Q86Z20 511 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 SERTAD1Q9UHV2 236 aa7.39□□□□□ -1.23
VPS41-211ENST00000466017 EDC4Q6P2E9 1401 aaKnown RBP7.38□□□□□ -1.23
VPS41-211ENST00000466017 SSH2Q76I76 1423 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 NSD3Q9BZ95 1437 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 TMEM94Q12767 1356 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 ACEP12821 1306 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 TTC21AQ8NDW8 1320 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 THBS1P07996 1170 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 CLDN10P78369 228 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 VWA5B2Q8N398 1253 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS41-211ENST00000466017 ZNF592Q92610 1267 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 NLRP3Q96P20 1036 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 FMN2Q9NZ56 1722 aa7.38□□□□□ -1.23
VPS41-211ENST00000466017 INSRP06213 1382 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 GDF10P55107 478 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 SLC27A3Q5K4L6 730 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 RNFT1Q5M7Z0 435 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 NBPF10Q6P3W6 841 aaKnown RBP7.37□□□□□ -1.23
VPS41-211ENST00000466017 NBPF15Q8N660 670 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 LRRC7Q96NW7 1537 aa7.37□□□□□ -1.23
VPS41-211ENST00000466017 STRCP1A6NGW2 1772 aa7.36□□□□□ -1.23
VPS41-211ENST00000466017 USP31Q70CQ4 1352 aa7.36□□□□□ -1.23
VPS41-211ENST00000466017 ITSN1Q15811 1721 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms