RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-205	ENST00000417040	RBM8A	Q9Y5S9	174 aa	Known RBP	13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	SYNJ2	O15056	1496 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040		A0A1W2PRG0	241 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	IFIT5	Q13325	482 aa	Known RBP	13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	ZNF569	Q5MCW4	686 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	IFNK	Q9P0W0	207 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	CTAGE9	A4FU28	777 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	ZBTB3	Q9H5J0	574 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	HDAC1	Q13547	482 aa	Predicted RBP	13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	HOOK3	Q86VS8	718 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	CAVIN4	Q5BKX8	364 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	IQCA1	Q86XH1	822 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	DZIP1	Q86YF9	867 aa	Known RBP	13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	PSMD1	Q99460	953 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	RTL1	A6NKG5	1358 aa		13.79	□□□□□ -0.2
UBR4-205	ENST00000417040	FAM160A1	Q05DH4	1040 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	CALML4	Q96GE6	196 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	GUCA1B	Q9UMX6	200 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	IFT81	Q8WYA0	676 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	TAOK3	Q9H2K8	898 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	OGFR	Q9NZT2	677 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	ABCC11	Q96J66	1382 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	DES	P17661	470 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	PDE1A	P54750	535 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	AK2	P54819	239 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	ALG1	Q9BT22	464 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	AKR1B10	O60218	316 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	RLBP1	P12271	317 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	UTP14A	Q9BVJ6	771 aa	Known RBP	13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	EXOC1	Q9NV70	894 aa		13.78	□□□□□ -0.2
UBR4-205	ENST00000417040	CPA1	P15085	419 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	NCOA7	Q8NI08	942 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	SNX21	Q969T3	373 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	DHX58	Q96C10	678 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	ANKIB1	Q9P2G1	1089 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	ADGRF5	Q8IZF2	1346 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	PI4KAP2	A4QPH2	592 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	CKAP4	Q07065	602 aa	Known RBP	13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	PI4KAP1	Q8N8J0	262 aa		13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	MRPS27	Q92552	414 aa	Known RBP	13.77	□□□□□ -0.2
UBR4-205	ENST00000417040	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.77	□□□□□ -0.2	2e-8	■□□□□ 11.2
UBR4-205	ENST00000417040	CCDC160	A6NGH7	325 aa		13.77	□□□□□ -0.21
UBR4-205	ENST00000417040	NCAPD3	P42695	1498 aa		13.77	□□□□□ -0.21
UBR4-205	ENST00000417040	RIOK3	O14730	519 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-205	ENST00000417040	RHPN1	Q8TCX5	695 aa		13.77	□□□□□ -0.21
UBR4-205	ENST00000417040	STAMBP	O95630	424 aa		13.77	□□□□□ -0.21
UBR4-205	ENST00000417040	SLC5A1	P13866	664 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	CCDC6	Q16204	474 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	FBF1	Q8TES7	1133 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	HOMER2	Q9NSB8	354 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	TCP11L1	Q9NUJ3	509 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	TRMT112	Q9UI30	125 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	RAPGEF3	O95398	923 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	MXRA7	P84157	204 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	MFSD6	Q6ZSS7	791 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	SBNO2	Q9Y2G9	1366 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	FSD2	A1L4K1	749 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	KRT13	P13646	458 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	NMI	Q13287	307 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	KIAA0753	Q2KHM9	967 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	FAM114A1	Q8IWE2	563 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	EFCAB5	A4FU69	1503 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	CCDC121	Q6ZUS5	278 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	NBPF11	Q86T75	865 aa		13.76	□□□□□ -0.21
UBR4-205	ENST00000417040	STAT6	P42226	847 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	TSC1	Q92574	1164 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	GJC1	P36383	396 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	UBA7	P41226	1012 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	OTUD6B	Q8N6M0	293 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	KIF4A	O95239	1232 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	RXRA	P19793	462 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	APOBR	Q0VD83	1088 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	PA2G4	Q9UQ80	394 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	SYCP3	Q8IZU3	236 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	PLIN2	Q99541	437 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	STARD3NL	O95772	234 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	KANK3	Q6NY19	840 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	CCDC155	Q8N6L0	562 aa		13.75	□□□□□ -0.21
UBR4-205	ENST00000417040	AMPD3	Q01432	767 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	UBE3B	Q7Z3V4	1068 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	RAB34	Q9BZG1	259 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	C8orf58	Q8NAV2	365 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	ANKRD18B	A2A2Z9	1011 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	OPA1	O60313	960 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	2e-6	■■■■□ 24.2
UBR4-205	ENST00000417040	TNIP1	Q15025	636 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	SMC5	Q8IY18	1101 aa		13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	MRPL50	Q8N5N7	158 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-205	ENST00000417040	UBXN1	Q04323	297 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	PRDM11	Q9NQV5	511 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	EHBP1	Q8NDI1	1231 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	KAT14	Q9H8E8	782 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	HMG20B	Q9P0W2	317 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	TSPY2	A6NKD2	308 aa		13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	CYLC1	P35663	651 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-205	ENST00000417040	OSCAR	Q8IYS5	282 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms