RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 SLC9C2Q5TAH2 1124 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 ZSCAN29Q8IWY8 852 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 HMG20BQ9P0W2 317 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 PPFIA3O75145 1194 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 PIK3C2BO00750 1634 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 GNPATO15228 680 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 PIBF1Q8WXW3 757 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 RANBP6O60518 1105 aaKnown RBP16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 LRRC2Q9BYS8 371 aa16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 GUCY1B3Q02153 619 aa16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 ASAP1Q9ULH1 1129 aa16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 PDIA4P13667 645 aaKnown RBP16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 BRF1Q92994 677 aa16.68■□□□□ 0.26
SHROOM1-203ENST00000378679 A0A1B0GUL7 405 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 NECAB1Q8N987 351 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 JMYQ8N9B5 988 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 PRDM10Q9NQV6 1147 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 CFAP45Q9UL16 551 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 IFIT3O14879 490 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 LAMC1P11047 1609 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 TNNI3KQ59H18 835 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 SNX21Q969T3 373 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 GDPD2Q9HCC8 539 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 FPGT-TNNI3KV9GXZ4 949 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 NRXN1Q9ULB1 1477 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 SETD1BQ9UPS6 1966 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 FRMPD1Q5SYB0 1578 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 POLR3DP05423 398 aaPredicted RBP16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 MKNK2Q9HBH9 465 aa16.67■□□□□ 0.26
SHROOM1-203ENST00000378679 ITGA6P23229 1130 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 TSPY26PQ9H489 355 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 CCDC87Q9NVE4 849 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 CCNL1Q9UK58 526 aaPredicted RBP16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 USP21Q9UK80 565 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 TCIRG1Q13488 830 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 RRAGDQ9NQL2 400 aaPredicted RBP16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 GOLGA8BA8MQT2 603 aa16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 LETM1O95202 739 aaPredicted RBP16.66■□□□□ 0.26
SHROOM1-203ENST00000378679 USP31Q70CQ4 1352 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 RAB11FIP4Q86YS3 637 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 CYP27B1O15528 508 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 XRCC6P12956 609 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 GJB2P29033 226 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 CCDC47Q96A33 483 aaKnown RBP16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 MED14O60244 1454 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 VWDEQ8N2E2 1590 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 IQCA1Q86XH1 822 aa16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 RNF41Q9H4P4 317 aaPredicted RBP16.65■□□□□ 0.26
SHROOM1-203ENST00000378679 TNMDQ9H2S6 317 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 ADGRB1O14514 1584 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 STX6O43752 255 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 HMGN5P82970 282 aaKnown RBP16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 NDUFB9Q9Y6M9 179 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 BAG4O95429 457 aaKnown RBP16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 CYP7A1P22680 504 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 PARP10Q53GL7 1025 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 C8orf76Q96K31 380 aa16.64■□□□□ 0.25
SHROOM1-203ENST00000378679 RBM25P49756 843 aaKnown RBP16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 TFIP11Q9UBB9 837 aaKnown RBP16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 SLC12A7Q9Y666 1083 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 NCOA7Q8NI08 942 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 NYXQ9GZU5 481 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 PDE8AO60658 829 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 GSPT1P15170 499 aaKnown RBP16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 MICU3Q86XE3 530 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 SIRT2Q8IXJ6 389 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 TFCP2L1Q9NZI6 479 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 KDRP35968 1356 aa16.63■□□□□ 0.25
SHROOM1-203ENST00000378679 ST5P78524 1137 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 ERBB4Q15303 1308 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 RNF113AO15541 343 aaKnown RBP16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 CREB3L3Q68CJ9 461 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 EAF2Q96CJ1 260 aaPredicted RBP16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 NAT10Q9H0A0 1025 aaKnown RBP16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 CCDC196A0A1B0GTZ2 297 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 CPA1P15085 419 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 NSFL1CQ9UNZ2 370 aaKnown RBP16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 PTCH1Q13635 1447 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 DLC1Q96QB1 1528 aa16.62■□□□□ 0.25
SHROOM1-203ENST00000378679 TPM3P06753 285 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 TMEM67Q5HYA8 995 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 TRAPPC3LQ5T215 181 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 TRIM5Q9C035 493 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 CCDC192P0DO97 292 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 MCM5P33992 734 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 MFSD6Q6ZSS7 791 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 CCDC144CPQ8IYA2 1237 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 FAM227BQ96M60 508 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 SCAND2PQ9GZW5 306 aaPredicted RBP16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 CCDC171Q6TFL3 1326 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 SYCE3A1L190 88 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 CCDC24Q8N4L8 307 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 WASF1Q92558 559 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 SGSM2O43147 1006 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 LDHCP07864 332 aa16.61■□□□□ 0.25
SHROOM1-203ENST00000378679 SLC4A8Q2Y0W8 1093 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms