RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TOGARAM1Q9Y4F4 1720 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 SYCE3A1L190 88 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 GADD45BO75293 160 aaPredicted RBP24.07■■□□□ 1.44
VPS53-201ENST00000291074 SYT1P21579 422 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 NKX1-1Q15270 411 aaPredicted RBP24.07■■□□□ 1.44
VPS53-201ENST00000291074 TCEANC2Q96MN5 208 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 RBSNQ9H1K0 784 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 CWC25Q9NXE8 425 aaPredicted RBP24.07■■□□□ 1.44
VPS53-201ENST00000291074 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.07■■□□□ 1.44
VPS53-201ENST00000291074 UBE2Q2Q8WVN8 375 aa24.07■■□□□ 1.44
VPS53-201ENST00000291074 MBD3O95983 291 aa24.06■■□□□ 1.44
VPS53-201ENST00000291074 ME3Q16798 604 aa24.06■■□□□ 1.44
VPS53-201ENST00000291074 NECAB1Q8N987 351 aa24.06■■□□□ 1.44
VPS53-201ENST00000291074 STX6O43752 255 aa24.05■■□□□ 1.44
VPS53-201ENST00000291074 ZSCAN22P10073 491 aaPredicted RBP24.05■■□□□ 1.44
VPS53-201ENST00000291074 EVA1CP58658 441 aa24.05■■□□□ 1.44
VPS53-201ENST00000291074 USP48Q86UV5 1035 aa24.05■■□□□ 1.44
VPS53-201ENST00000291074 GJB2P29033 226 aa24.04■■□□□ 1.44
VPS53-201ENST00000291074 TPCN1Q9ULQ1 816 aa24.04■■□□□ 1.44
VPS53-201ENST00000291074 CCDC129Q6ZRS4 1044 aa24.04■■□□□ 1.44
VPS53-201ENST00000291074 DDX46Q7L014 1031 aaKnown RBP24.04■■□□□ 1.44
VPS53-201ENST00000291074 SEC62Q99442 399 aaKnown RBP24.04■■□□□ 1.44
VPS53-201ENST00000291074 ZNF330Q9Y3S2 320 aaPredicted RBP24.04■■□□□ 1.44
VPS53-201ENST00000291074 ATG9AQ7Z3C6 839 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 CNPY2Q9Y2B0 182 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 ZNF609O15014 1411 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 TNS2Q63HR2 1409 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 TAF5LO75529 589 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 ZNF594Q96JF6 807 aaPredicted RBP24.03■■□□□ 1.44
VPS53-201ENST00000291074 JCADQ9P266 1359 aa24.03■■□□□ 1.44
VPS53-201ENST00000291074 TPRNQ4KMQ1 711 aa24.02■■□□□ 1.44
VPS53-201ENST00000291074 NEUROD6Q96NK8 337 aa24.02■■□□□ 1.44
VPS53-201ENST00000291074 TRIM44Q96DX7 344 aaPredicted RBP24.01■■□□□ 1.43
VPS53-201ENST00000291074 ZSCAN31Q96LW9 406 aaPredicted RBP24.01■■□□□ 1.43
VPS53-201ENST00000291074 RNF20Q5VTR2 975 aa24.01■■□□□ 1.43
VPS53-201ENST00000291074 LRSAM1Q6UWE0 723 aa24.01■■□□□ 1.43
VPS53-201ENST00000291074 HAUS7Q99871 368 aa24.01■■□□□ 1.43
VPS53-201ENST00000291074 SH2B1Q9NRF2 756 aaPredicted RBP24.01■■□□□ 1.43
VPS53-201ENST00000291074 F13A1P00488 732 aa24■■□□□ 1.43
VPS53-201ENST00000291074 LRRC24Q50LG9 513 aa24■■□□□ 1.43
VPS53-201ENST00000291074 BLOC1S2Q6QNY1 142 aa24■■□□□ 1.43
VPS53-201ENST00000291074 PSMA5P28066 241 aa24■■□□□ 1.43
VPS53-201ENST00000291074 TIMM10P62072 90 aa24■■□□□ 1.43
VPS53-201ENST00000291074 CCDC173Q0VFZ6 552 aa24■■□□□ 1.43
VPS53-201ENST00000291074 SLFNL1Q499Z3 407 aa23.99■■□□□ 1.43
VPS53-201ENST00000291074 CCDC191Q8NCU4 936 aa23.99■■□□□ 1.43
VPS53-201ENST00000291074 TMOD3Q9NYL9 352 aa23.99■■□□□ 1.43
VPS53-201ENST00000291074 PPP1R9BQ96SB3 815 aa23.99■■□□□ 1.43
VPS53-201ENST00000291074 RPS6KB1P23443 525 aa23.98■■□□□ 1.43
VPS53-201ENST00000291074 ASAP1Q9ULH1 1129 aa23.98■■□□□ 1.43
VPS53-201ENST00000291074 MTMR6Q9Y217 621 aa23.98■■□□□ 1.43
VPS53-201ENST00000291074 KAT6BQ8WYB5 2073 aa23.98■■□□□ 1.43
VPS53-201ENST00000291074 ESPNB1AK53 854 aa23.97■■□□□ 1.43
VPS53-201ENST00000291074 ANP32BQ92688 251 aaKnown RBP23.97■■□□□ 1.43
VPS53-201ENST00000291074 PUS3Q9BZE2 481 aaKnown RBP23.97■■□□□ 1.43
VPS53-201ENST00000291074 NHSL1Q5SYE7 1610 aa23.97■■□□□ 1.43
VPS53-201ENST00000291074 TOB2Q14106 344 aaPredicted RBP23.97■■□□□ 1.43
VPS53-201ENST00000291074 VPS37CA5D8V6 355 aaPredicted RBP23.96■■□□□ 1.43
VPS53-201ENST00000291074 GOLIM4O00461 696 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 FIBPO43427 364 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 DNAJC10Q8IXB1 793 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 USPL1Q5W0Q7 1092 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 TMEM87AQ8NBN3 555 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 HMG20BQ9P0W2 317 aa23.96■■□□□ 1.43
VPS53-201ENST00000291074 KBTBD3Q8NAB2 608 aa23.95■■□□□ 1.42
VPS53-201ENST00000291074 CCDC85AQ96PX6 553 aaPredicted RBP23.95■■□□□ 1.42
VPS53-201ENST00000291074 EYA2O00167 538 aa23.95■■□□□ 1.42
VPS53-201ENST00000291074 IL15P40933 162 aaPredicted RBP23.95■■□□□ 1.42
VPS53-201ENST00000291074 PIGBQ92521 554 aa23.95■■□□□ 1.42
VPS53-201ENST00000291074 RFX7Q2KHR2 1363 aa23.95■■□□□ 1.42
VPS53-201ENST00000291074 KDM4FA0A1W2PPD8 638 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 MCMDC2Q4G0Z9 681 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 RNF214Q8ND24 703 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 ISCA1Q9BUE6 129 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 BTG4Q9NY30 223 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 STK3Q13188 491 aa23.94■■□□□ 1.42
VPS53-201ENST00000291074 CLCN1P35523 988 aa23.93■■□□□ 1.42
VPS53-201ENST00000291074 DNM1Q05193 864 aaKnown RBP23.93■■□□□ 1.42
VPS53-201ENST00000291074 PAG1Q9NWQ8 432 aa23.93■■□□□ 1.42
VPS53-201ENST00000291074 ITGB4P16144 1822 aa23.93■■□□□ 1.42
VPS53-201ENST00000291074 TSGA10IPQ3SY00 556 aa23.93■■□□□ 1.42
VPS53-201ENST00000291074 A0A1B0GUL7 405 aa23.92■■□□□ 1.42
VPS53-201ENST00000291074 TCIRG1Q13488 830 aa23.92■■□□□ 1.42
VPS53-201ENST00000291074 CYP21A2P08686 494 aa23.92■■□□□ 1.42
VPS53-201ENST00000291074 SYAP1Q96A49 352 aaPredicted RBP23.92■■□□□ 1.42
VPS53-201ENST00000291074 ANKRD1Q15327 319 aa23.91■■□□□ 1.42
VPS53-201ENST00000291074 FAM89AQ96GI7 184 aa23.91■■□□□ 1.42
VPS53-201ENST00000291074 GPR108Q9NPR9 543 aa23.91■■□□□ 1.42
VPS53-201ENST00000291074 ATG3Q9NT62 314 aa23.91■■□□□ 1.42
VPS53-201ENST00000291074 PALLDQ8WX93 1383 aa23.91■■□□□ 1.42
VPS53-201ENST00000291074 LARP1BQ659C4 914 aaKnown RBP23.9■■□□□ 1.42
VPS53-201ENST00000291074 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.9■■□□□ 1.42
VPS53-201ENST00000291074 ATP6V1DQ9Y5K8 247 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 U3KPZ7 1027 aaPredicted RBP23.9■■□□□ 1.42
VPS53-201ENST00000291074 LAMA4Q16363 1823 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 CDC37L1Q7L3B6 337 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 FERMT3Q86UX7 667 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 NEK1Q96PY6 1258 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 SH3TC1Q8TE82 1336 aa23.9■■□□□ 1.42
VPS53-201ENST00000291074 SYNE4Q8N205 404 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms