RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Il13P20109 131 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Eef1a2P62631 463 aaKnown RBP14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 JupQ02257 745 aaKnown RBP14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Prelid2Q0VBB0 177 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Olfr629Q0VBH3 314 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 AccslQ3UX83 580 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Zc3hc1Q80YV2 501 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 FgbQ8K0E8 481 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Vmn1r228Q8R2A7 333 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Cacng6Q8VHW3 260 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Arfgap1Q9EPJ9 414 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Alyref2Q9JJW6 218 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 PatjQ63ZW7 1834 aa14.64□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ino80eA0A0U1RP99 260 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ninj1O70131 152 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Agtr1aP29754 359 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gch1Q05915 241 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm1123Q1RME4 390 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Foxk2Q3UCQ1 651 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Adh7Q64437 374 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Alkbh2Q6P6J4 239 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Fam155aQ8CCS2 467 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Lhfpl3Q9CTN8 222 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Dclre1aQ9JIC3 1026 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 RhagQ9QUT0 438 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Cyhr1Q9QXA1 311 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Nlgn4lB0F2B4 945 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm10037E9PX85 104 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Vmn1r14H3BJ46 303 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Olfr237-ps1K9J725 310 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 BckdkO55028 412 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Hoxa4P06798 285 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 PpibP24369 216 aaKnown RBP14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Uba1yP31254 1058 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Eci1P42125 289 aaKnown RBP14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Atxn1P54254 791 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gtpbp2Q3UJK4 602 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Banf2Q8BVR0 90 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ssuh2Q8C3L1 340 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Mettl7a1Q8C6B0 244 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Hhipl2Q9D2G9 717 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Phf6Q9D4J7 364 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 BvesQ9ES83 358 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm6710A2ART0 554 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm8159E9Q0R1 267 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm17067E9Q6S4 354 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm11027G8JL69 66 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Vmn2r9K7N6Z8 848 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Mapk14P47811 360 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ybx1P62960 322 aaKnown RBP14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Zfp39Q02525 718 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Pdss2Q33DR3 401 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Cldn34b4Q3V0X2 211 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Plk5Q4FZD7 595 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Epha1Q60750 977 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Tusc1Q673H1 205 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Grsf1Q8C5Q4 479 aaKnown RBP14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Utp15Q8C7V3 528 aaKnown RBP14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Atxn7l2Q8C8K6 696 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Cacnb4Q8R0S4 519 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Tmed4Q8R1V4 227 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Slc22a6Q8VC69 545 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 EtfdhQ921G7 616 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Art4Q9CRA0 300 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Plekhj1Q9D240 164 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 MmabQ9D273 237 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Lpar3Q9EQ31 354 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Plag1Q9QYE0 499 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Nfkb2Q9WTK5 899 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Shroom3Q9QXN0 1986 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 BC025446A0A087WQT1 134 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Vmn2r98E9PZ56 857 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Gm6526G3X9Q9 198 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Rit1P70426 219 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Lin54Q571G4 749 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ppp5cQ60676 499 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Tas2r136Q7TQA8 305 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Rab43Q8CG50 210 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Slc31a1Q8K211 196 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Vmn1r217Q8R270 298 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ssna1Q9JJ94 119 aa14.63□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 CntrlA2AL36 2334 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ndor1A2AI05 598 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Pfdn2O70591 154 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Htr1bP28334 386 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Hoxa10P31310 416 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Hcrtr2P58308 460 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 VaspP70460 375 aaKnown RBP14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Kcnk2P97438 426 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 GnrhrQ01776 327 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Rnase12Q5GAM8 145 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 HepacamQ640R3 418 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Rftn1Q6A0D4 554 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Prdx6bQ8BG37 224 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Q8BPC6 396 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Defb22Q8BVC1 179 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Ffar2Q8VCK6 330 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Dcdc2cQ9D1B8 347 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 Prl8a8Q9DAS4 241 aa14.62□□□□□ -0.07
Ccdc88b-201ENSMUST00000113440 PrelpQ9JK53 378 aa14.62□□□□□ -0.07
Retrieved 100 of 22,080 RNA–protein pairs in 32.6 ms