RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C NDT80P38830 627 aa9.23□□□□□ -0.93
RPD3YNL330C TIF4631P39935 952 aaKnown RBP9.23□□□□□ -0.93
RPD3YNL330C YEL075CP39972 122 aa9.23□□□□□ -0.93
RPD3YNL330C RPN3P40016 523 aaKnown RBP9.23□□□□□ -0.93
RPD3YNL330C LCP5P40079 357 aaPredicted RBP9.23□□□□□ -0.93
RPD3YNL330C YER189WP40104 122 aa9.23□□□□□ -0.93
RPD3YNL330C SAP185P40856 1058 aa9.23□□□□□ -0.93
RPD3YNL330C YFL064CP43540 174 aa9.23□□□□□ -0.93
RPD3YNL330C YNL035CP53962 389 aaKnown RBP9.23□□□□□ -0.93
RPD3YNL330C YMR187CQ03236 431 aa9.23□□□□□ -0.93
RPD3YNL330C YML082WQ04533 649 aaKnown RBP9.23□□□□□ -0.93
RPD3YNL330C YBL111CQ3E7Y5 667 aa9.23□□□□□ -0.93
RPD3YNL330C SEY1Q99287 776 aa9.23□□□□□ -0.93
RPD3YNL330C JIP3O13555 125 aa9.22□□□□□ -0.93
RPD3YNL330C RPS9BP05755 195 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C ERG12P07277 443 aa9.22□□□□□ -0.93
RPD3YNL330C ADH4P10127 382 aa9.22□□□□□ -0.93
RPD3YNL330C SUP45P12385 437 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C PRP9P19736 530 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C PRP22P24384 1145 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C YME1P32795 747 aa9.22□□□□□ -0.93
RPD3YNL330C YEL1P34225 687 aa9.22□□□□□ -0.93
RPD3YNL330C PGM2P37012 569 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C MRX1P40050 688 aa9.22□□□□□ -0.93
RPD3YNL330C UTP7P40055 554 aaKnown RBP9.22□□□□□ -0.93
RPD3YNL330C ULP2P40537 1034 aaPredicted RBP9.22□□□□□ -0.93
RPD3YNL330C DIP5P53388 608 aa9.22□□□□□ -0.93
RPD3YNL330C HIF1Q12373 385 aa9.22□□□□□ -0.93
RPD3YNL330C FKS1P38631 1876 aaKnown RBP9.21□□□□□ -0.93
RPD3YNL330C TUB2P02557 457 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C PYC1P11154 1178 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C ILV6P25605 309 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C SUV3P32580 737 aa9.21□□□□□ -0.94
RPD3YNL330C RAD54P32863 898 aa9.21□□□□□ -0.94
RPD3YNL330C HIS2P38635 335 aa9.21□□□□□ -0.94
RPD3YNL330C SHC1P39000 512 aa9.21□□□□□ -0.94
RPD3YNL330C LCB2P40970 561 aa9.21□□□□□ -0.94
RPD3YNL330C GPD2P41911 440 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C RIM8P53179 542 aa9.21□□□□□ -0.94
RPD3YNL330C RPL22BP56628 122 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C UTP6Q02354 440 aaKnown RBP9.21□□□□□ -0.94
RPD3YNL330C MTG1Q03151 367 aaPredicted RBP9.21□□□□□ -0.94
RPD3YNL330C YML119WQ03208 357 aa9.21□□□□□ -0.94
RPD3YNL330C YDR338CQ05497 695 aa9.21□□□□□ -0.94
RPD3YNL330C PHM6Q05637 104 aa9.21□□□□□ -0.94
RPD3YNL330C FRA1Q07825 749 aa9.21□□□□□ -0.94
RPD3YNL330C TAF10Q12030 206 aa9.21□□□□□ -0.94
RPD3YNL330C YCR051WP25631 222 aa9.2□□□□□ -0.94
RPD3YNL330C KIP1P28742 1111 aa9.2□□□□□ -0.94
RPD3YNL330C NAM7P30771 971 aaKnown RBP9.2□□□□□ -0.94
RPD3YNL330C TFC4P33339 1025 aa9.2□□□□□ -0.94
RPD3YNL330C RPC37P36121 282 aa9.2□□□□□ -0.94
RPD3YNL330C ECM2P38241 364 aaKnown RBP9.2□□□□□ -0.94
RPD3YNL330C MMS21P38632 267 aa9.2□□□□□ -0.94
RPD3YNL330C INA22P40576 216 aa9.2□□□□□ -0.94
RPD3YNL330C LIF1P53150 421 aa9.2□□□□□ -0.94
RPD3YNL330C CPR6P53691 371 aaKnown RBP9.2□□□□□ -0.94
RPD3YNL330C NCS2P53923 493 aaPredicted RBP9.2□□□□□ -0.94
RPD3YNL330C ALD6P54115 500 aaKnown RBP9.2□□□□□ -0.94
RPD3YNL330C TIM8P57744 87 aa9.2□□□□□ -0.94
RPD3YNL330C UBP3Q01477 912 aaKnown RBP RIP-Chip data9.2□□□□□ -0.94not detected
RPD3YNL330C KIN4Q01919 800 aa9.2□□□□□ -0.94
RPD3YNL330C TDA9Q04545 1251 aa9.2□□□□□ -0.94
RPD3YNL330C PIG1Q06216 648 aa9.2□□□□□ -0.94
RPD3YNL330C PGK1P00560 416 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C TCP1P12612 559 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C MSM1P22438 575 aa9.19□□□□□ -0.94
RPD3YNL330C ESS1P22696 170 aa9.19□□□□□ -0.94
RPD3YNL330C PLC1P32383 869 aa9.19□□□□□ -0.94
RPD3YNL330C EUG1P32474 517 aa9.19□□□□□ -0.94
RPD3YNL330C RRT2P38332 387 aa9.19□□□□□ -0.94
RPD3YNL330C TIF5P38431 405 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C KAP123P40069 1113 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C SMX2P40204 77 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C NMD5P46970 1048 aa9.19□□□□□ -0.94
RPD3YNL330C URB2P47108 1174 aa9.19□□□□□ -0.94
RPD3YNL330C EAF6P47128 113 aa9.19□□□□□ -0.94
RPD3YNL330C BRO1P48582 844 aa9.19□□□□□ -0.94
RPD3YNL330C USA1Q03714 838 aa9.19□□□□□ -0.94
RPD3YNL330C DON1Q05610 365 aa9.19□□□□□ -0.94
RPD3YNL330C WHI4Q07655 649 aaKnown RBP9.19□□□□□ -0.94
RPD3YNL330C CDC33P07260 213 aaKnown RBP9.18□□□□□ -0.94
RPD3YNL330C PMR1P13586 950 aa9.18□□□□□ -0.94
RPD3YNL330C DBP5P20449 482 aaKnown RBP9.18□□□□□ -0.94
RPD3YNL330C PSE1P32337 1089 aaKnown RBP9.18□□□□□ -0.94
RPD3YNL330C YSC83P32792 385 aa9.18□□□□□ -0.94
RPD3YNL330C TRZ1P36159 838 aaPredicted RBP9.18□□□□□ -0.94
RPD3YNL330C EXO5P38289 585 aa9.18□□□□□ -0.94
RPD3YNL330C KEL1P38853 1164 aaKnown RBP9.18□□□□□ -0.94
RPD3YNL330C YER156CP40093 338 aaKnown RBP9.18□□□□□ -0.94
RPD3YNL330C FIS1P40515 155 aa9.18□□□□□ -0.94
RPD3YNL330C ARK1P53974 638 aa9.18□□□□□ -0.94
RPD3YNL330C PUF3Q07807 879 aaKnown RBP RIP-Chip data9.18□□□□□ -0.94 RIP-Chip
RPD3YNL330C NCA2Q12374 616 aa9.18□□□□□ -0.94
RPD3YNL330C RKM4Q12504 494 aa9.18□□□□□ -0.94
RPD3YNL330C PEP5P12868 1029 aa9.17□□□□□ -0.94
RPD3YNL330C POL3P15436 1097 aa9.17□□□□□ -0.94
RPD3YNL330C SPO16P17122 198 aa9.17□□□□□ -0.94
RPD3YNL330C VPS35P34110 944 aa9.17□□□□□ -0.94
RPD3YNL330C UBP11P36026 717 aa9.17□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms