RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	GYP5	Q12344	894 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	SNF3	P10870	884 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	SNA3	P14359	133 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	ADP1	P25371	1049 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	CBF2	P32504	956 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	NPL6	P32832	435 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	SEG2	P34250	1132 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	PTK1	P36002	662 aa	Predicted RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	SPP381	P38282	291 aa	Predicted RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	OSH3	P38713	996 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	CCT2	P39076	527 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	SAP185	P40856	1058 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	MAD1	P40957	749 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	NET1	P47035	1189 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	YGR237C	P50089	785 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	MSH6	Q03834	1242 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	INM2	Q05533	292 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	YLH47	Q06493	454 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	PSR1	Q07800	427 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	MSH5	Q12175	901 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	RRI2	Q12348	645 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	ENO1	P00924	437 aa	Known RBP	5.18	□□□□□ -1.58
CAF4	YKR036C	REC107	P21651	314 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	SIN4	P32259	974 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	SAC6	P32599	642 aa	Known RBP	5.18	□□□□□ -1.58
CAF4	YKR036C	YEL1	P34225	687 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	PIM1	P36775	1133 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	BRO1	P48582	844 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	CUE3	P53137	624 aa	Known RBP	5.18	□□□□□ -1.58
CAF4	YKR036C	HST2	P53686	357 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	COG6	P53959	839 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	MUB1	Q03162	620 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	NOP12	Q08208	459 aa	Known RBP	5.18	□□□□□ -1.58
CAF4	YKR036C	SGT2	Q12118	346 aa	Known RBP	5.18	□□□□□ -1.58
CAF4	YKR036C	GPR1	Q12361	961 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	NCA2	Q12374	616 aa		5.18	□□□□□ -1.58
CAF4	YKR036C	YPR089W	O13585	888 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	RGP1	P16664	663 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	URA1	P28272	314 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	PYC2	P32327	1180 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	VPH2	P32341	215 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	HXT1	P32465	570 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	MDL2	P33311	773 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	OCT1	P35999	772 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	ERG7	P38604	731 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	MIP6	P38760	659 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	SSF1	P38789	453 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	RTS1	P38903	757 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	HAL5	P38970	855 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	STM1	P39015	273 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	SEC27	P41811	889 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	EPL1	P43572	832 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	POL31	P46957	487 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	SET2	P46995	733 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	PKH3	Q03306	898 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	UTP5	Q04177	643 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	URH1	Q04179	340 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	PCL8	Q08966	492 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	CFT2	Q12102	859 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	RTP1	Q12751	981 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	VPS5	Q92331	675 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	PPR1	P07272	904 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	SBP1	P10080	294 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	ADH4	P10127	382 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	HSC82	P15108	705 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	PAH1	P32567	862 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	YBL028C	P38202	106 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	PSF2	P40359	213 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	YNL320W	P42840	284 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	YJR039W	P47107	1121 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	IMD4	P50094	524 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	MCM6	P53091	1017 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	DSL1	P53847	754 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	ESBP6	P53918	673 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	YNL040W	P53960	456 aa	Predicted RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	RPT6	Q01939	405 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	ULP1	Q02724	621 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	YML108W	Q03759	105 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	HFD1	Q04458	532 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	TMA64	Q04600	565 aa	Known RBP	5.17	□□□□□ -1.58
CAF4	YKR036C	SOV1	Q04748	898 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	NSE1	Q07913	336 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	BUD7	Q08754	746 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	IES3	Q12345	250 aa		5.17	□□□□□ -1.58
CAF4	YKR036C	PEP3	P27801	918 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	MLS1	P30952	554 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	SLA1	P32790	1244 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	IXR1	P33417	597 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	MAL31	P38156	614 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	SIP3	P38717	1229 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	PEX18	P38855	283 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	TIF4631	P39935	952 aa	Known RBP	5.16	□□□□□ -1.58
CAF4	YKR036C	ACA1	P39970	489 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	VFA1	P40080	203 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	BTN2	P53286	410 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	YNL193W	P53870	558 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	UME1	Q03010	460 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	EBS1	Q03466	884 aa	Known RBP	5.16	□□□□□ -1.58
CAF4	YKR036C	YDR179W-A	Q03983	463 aa		5.16	□□□□□ -1.58
CAF4	YKR036C	YLR287C	Q05881	355 aa		5.16	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms