RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C CSN12P47130 423 aa2.36□□□□□ -2.03
UFD4YKL010C CCM1P48237 864 aaPredicted RBP2.36□□□□□ -2.03
UFD4YKL010C SLK19Q08581 821 aaKnown RBP2.36□□□□□ -2.03
UFD4YKL010C AFT2Q08957 416 aa2.36□□□□□ -2.03
UFD4YKL010C RPS6AP0CX37 236 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C RPS6BP0CX38 236 aaPredicted RBP2.35□□□□□ -2.03
UFD4YKL010C TRM2P33753 639 aa2.35□□□□□ -2.03
UFD4YKL010C FTH1P38310 465 aa2.35□□□□□ -2.03
UFD4YKL010C SMF1P38925 575 aa2.35□□□□□ -2.03
UFD4YKL010C VPS41P38959 992 aa2.35□□□□□ -2.03
UFD4YKL010C SHC1P39000 512 aa2.35□□□□□ -2.03
UFD4YKL010C MIC19P43594 170 aa2.35□□□□□ -2.03
UFD4YKL010C SDA1P53313 767 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C MTG1Q03151 367 aaPredicted RBP2.35□□□□□ -2.03
UFD4YKL010C YMR187CQ03236 431 aa2.35□□□□□ -2.03
UFD4YKL010C PPM1Q04081 328 aa2.35□□□□□ -2.03
UFD4YKL010C UTP5Q04177 643 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C TMA64Q04600 565 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C ATG23Q06671 453 aa2.35□□□□□ -2.03
UFD4YKL010C TSR1Q07381 788 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C CDC15P27636 974 aa2.35□□□□□ -2.03
UFD4YKL010C SEC65P29478 273 aa2.35□□□□□ -2.03
UFD4YKL010C MED8P38304 223 aa2.35□□□□□ -2.03
UFD4YKL010C CIT3P43635 486 aa2.35□□□□□ -2.03
UFD4YKL010C ASE1P50275 885 aa2.35□□□□□ -2.03
UFD4YKL010C PTA1Q01329 785 aaPredicted RBP2.35□□□□□ -2.03
UFD4YKL010C MRD1Q06106 887 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C ISA1Q07821 250 aaPredicted RBP2.35□□□□□ -2.03
UFD4YKL010C SSA2P10592 639 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C SMY1P32364 656 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C SUV3P32580 737 aa2.35□□□□□ -2.03
UFD4YKL010C VTC4P47075 721 aa2.35□□□□□ -2.03
UFD4YKL010C SNU71P53207 620 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C UBP2Q01476 1272 aa2.35□□□□□ -2.03
UFD4YKL010C HCR1Q05775 265 aaKnown RBP2.35□□□□□ -2.03
UFD4YKL010C YLR297WQ05899 129 aa2.35□□□□□ -2.03
UFD4YKL010C SPP382Q06411 708 aaPredicted RBP2.35□□□□□ -2.03
UFD4YKL010C TCP1P12612 559 aaKnown RBP2.34□□□□□ -2.03
UFD4YKL010C TRK2P28584 889 aa2.34□□□□□ -2.03
UFD4YKL010C CHS3P29465 1165 aa2.34□□□□□ -2.03
UFD4YKL010C SRB4P32569 687 aa2.34□□□□□ -2.03
UFD4YKL010C FRD1P32614 470 aaKnown RBP2.34□□□□□ -2.03
UFD4YKL010C BEM3P32873 1128 aa2.34□□□□□ -2.03
UFD4YKL010C UBP11P36026 717 aa2.34□□□□□ -2.03
UFD4YKL010C RTT107P38850 1070 aa2.34□□□□□ -2.03
UFD4YKL010C LCB2P40970 561 aa2.34□□□□□ -2.03
UFD4YKL010C PHO86P46956 311 aa2.34□□□□□ -2.03
UFD4YKL010C LYS4P49367 693 aaPredicted RBP2.34□□□□□ -2.03
UFD4YKL010C SFH1Q06168 426 aa2.34□□□□□ -2.03
UFD4YKL010C ESF1Q06344 628 aaKnown RBP2.34□□□□□ -2.03
UFD4YKL010C MED1Q12321 566 aa2.34□□□□□ -2.03
UFD4YKL010C CIT1P00890 479 aa2.34□□□□□ -2.03
UFD4YKL010C PHR1P05066 565 aaKnown RBP RIP-Chip data2.34□□□□□ -2.03not detected
UFD4YKL010C STE6P12866 1290 aa2.34□□□□□ -2.03
UFD4YKL010C RME1P32338 300 aaKnown RBP2.34□□□□□ -2.03
UFD4YKL010C YSC83P32792 385 aa2.34□□□□□ -2.03
UFD4YKL010C RGD1P38339 666 aa2.34□□□□□ -2.03
UFD4YKL010C PRP31P49704 494 aaPredicted RBP2.34□□□□□ -2.03
UFD4YKL010C NBP1P52919 319 aaPredicted RBP2.34□□□□□ -2.03
UFD4YKL010C ORC4P54791 529 aa2.34□□□□□ -2.03
UFD4YKL010C RNT1Q02555 471 aa2.34□□□□□ -2.03
UFD4YKL010C SEN54Q02825 467 aaPredicted RBP2.34□□□□□ -2.03
UFD4YKL010C GYL1Q04322 720 aa2.34□□□□□ -2.03
UFD4YKL010C GAS5Q08193 484 aa2.34□□□□□ -2.03
UFD4YKL010C YOL075CQ08234 1294 aa2.34□□□□□ -2.03
UFD4YKL010C RAD59Q12223 238 aa2.34□□□□□ -2.03
UFD4YKL010C PHO8P11491 566 aa2.34□□□□□ -2.03
UFD4YKL010C RPL8BP29453 256 aaKnown RBP2.34□□□□□ -2.03
UFD4YKL010C ECM1P39715 212 aa2.34□□□□□ -2.03
UFD4YKL010C NDC80P40460 691 aa2.34□□□□□ -2.03
UFD4YKL010C IES1P43579 692 aa2.34□□□□□ -2.03
UFD4YKL010C ROD1Q02805 837 aa2.34□□□□□ -2.03
UFD4YKL010C YPL277CQ08989 487 aa2.34□□□□□ -2.03
UFD4YKL010C CCP1P00431 361 aa2.34□□□□□ -2.04
UFD4YKL010C SNF1P06782 633 aaKnown RBP2.34□□□□□ -2.04
UFD4YKL010C ADH4P10127 382 aa2.34□□□□□ -2.04
UFD4YKL010C HEM15P16622 393 aa2.34□□□□□ -2.04
UFD4YKL010C NIP100P33420 868 aa2.34□□□□□ -2.04
UFD4YKL010C SIP5P40210 489 aaKnown RBP2.34□□□□□ -2.04
UFD4YKL010C YGR035CP53222 116 aa2.34□□□□□ -2.04
UFD4YKL010C VPS30Q02948 557 aa2.34□□□□□ -2.04
UFD4YKL010C TRS120Q04183 1289 aa2.34□□□□□ -2.04
UFD4YKL010C HPF1Q05164 967 aa2.34□□□□□ -2.04
UFD4YKL010C PSR1Q07800 427 aa2.34□□□□□ -2.04
UFD4YKL010C YLR278CQ05854 1341 aa2.34□□□□□ -2.04
UFD4YKL010C CTT1P06115 562 aa2.33□□□□□ -2.04
UFD4YKL010C KIP1P28742 1111 aa2.33□□□□□ -2.04
UFD4YKL010C PAP1P29468 568 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C YKL091CP33324 310 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C SAP190P36123 1033 aa2.33□□□□□ -2.04
UFD4YKL010C LAS1P36146 502 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C TRZ1P36159 838 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C YBR032WP38223 100 aa2.33□□□□□ -2.04
UFD4YKL010C FIS1P40515 155 aa2.33□□□□□ -2.04
UFD4YKL010C MSN5P52918 1224 aa2.33□□□□□ -2.04
UFD4YKL010C DSE4P53753 1117 aa2.33□□□□□ -2.04
UFD4YKL010C YNL108CP53929 270 aa2.33□□□□□ -2.04
UFD4YKL010C TY1A-MR1Q04215 440 aa2.33□□□□□ -2.04
UFD4YKL010C PHM6Q05637 104 aa2.33□□□□□ -2.04
UFD4YKL010C CSR1Q06705 408 aaKnown RBP2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 94.9 ms