RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	SDH1	Q00711	640 aa		7.12	□□□□□ -1.27
TRP1	YDR007W	NAM7	P30771	971 aa	Known RBP	7.11	□□□□□ -1.27
TRP1	YDR007W	MCX1	P38323	520 aa	Predicted RBP	7.11	□□□□□ -1.27
TRP1	YDR007W	AKR1	P39010	764 aa		7.11	□□□□□ -1.27
TRP1	YDR007W	RCM1	P53972	490 aa		7.11	□□□□□ -1.27
TRP1	YDR007W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	7.11	□□□□□ -1.27	not detected
TRP1	YDR007W	THI72	Q08579	599 aa		7.11	□□□□□ -1.27
TRP1	YDR007W	NOT3	P06102	836 aa	Known RBP	7.1	□□□□□ -1.27
TRP1	YDR007W	AEP2	P22136	580 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	HIR1	P32479	840 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	SWE1	P32944	819 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	TFC4	P33339	1025 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	ECM21	P38167	1117 aa	Known RBP	7.1	□□□□□ -1.27
TRP1	YDR007W	YAP1801	P38856	637 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	PEA2	P40091	420 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	RLP7	P40693	322 aa	Known RBP	7.1	□□□□□ -1.27
TRP1	YDR007W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	7.1	□□□□□ -1.27	not detected
TRP1	YDR007W	HXT16	P47185	567 aa		7.1	□□□□□ -1.27
TRP1	YDR007W	LRS4	Q04087	347 aa	Known RBP	7.1	□□□□□ -1.27
TRP1	YDR007W	MON2	P48563	1636 aa	Predicted RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	RPS9A	O13516	197 aa	Known RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	DIF1	O13577	133 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	KAR1	P11927	433 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	YCL002C	P25565	263 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	PWP2	P25635	923 aa	Known RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	URA1	P28272	314 aa	Predicted RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	CYS3	P31373	394 aa	Known RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	SAP190	P36123	1033 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	RFC5	P38251	354 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	HSL7	P38274	827 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	CEP3	P40969	608 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	MNN11	P46985	422 aa	Known RBP	7.09	□□□□□ -1.27
TRP1	YDR007W	PRY1	P47032	299 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	TGL2	P54857	326 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	VPS30	Q02948	557 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	TDA6	Q06466	467 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	MPD2	Q99316	277 aa		7.09	□□□□□ -1.27
TRP1	YDR007W	AIM26	P32858	118 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	SHR5	P41912	237 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	YGR153W	P48238	217 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	VPS72	Q03388	795 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	VMS1	Q04311	632 aa	Known RBP	7.08	□□□□□ -1.28
TRP1	YDR007W	YDR338C	Q05497	695 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	TRE1	Q08919	783 aa		7.08	□□□□□ -1.28
TRP1	YDR007W	YEF3	P16521	1044 aa	Known RBP	7.07	□□□□□ -1.28
TRP1	YDR007W	CCR4	P31384	837 aa	Known RBP	7.07	□□□□□ -1.28
TRP1	YDR007W	VPS24	P36095	224 aa	Known RBP	7.07	□□□□□ -1.28
TRP1	YDR007W	DID4	P36108	232 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	TDA3	P38758	523 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	YNL034W	P53963	612 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	YNL018C	P53976	612 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	7.07	□□□□□ -1.28	not detected
TRP1	YDR007W	XYL2	Q07993	356 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	BUD21	Q08492	214 aa	Predicted RBP	7.07	□□□□□ -1.28
TRP1	YDR007W	RMP1	Q12530	201 aa		7.07	□□□□□ -1.28
TRP1	YDR007W	SPS1	P08458	490 aa		7.06	□□□□□ -1.28
TRP1	YDR007W	SST2	P11972	698 aa	Known RBP	7.06	□□□□□ -1.28
TRP1	YDR007W	STE13	P33894	931 aa		7.06	□□□□□ -1.28
TRP1	YDR007W	PEX7	P39108	375 aa		7.06	□□□□□ -1.28
TRP1	YDR007W	GPP2	P40106	250 aa	Known RBP	7.06	□□□□□ -1.28
TRP1	YDR007W	NIT2	P47016	307 aa		7.06	□□□□□ -1.28
TRP1	YDR007W	UBC9	P50623	157 aa	Predicted RBP	7.06	□□□□□ -1.28
TRP1	YDR007W	YBR182C-A	Q8TGU6	64 aa		7.06	□□□□□ -1.28
TRP1	YDR007W	ENA1	P13587	1091 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	MIH1	P23748	554 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	APL1	P27351	700 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	PTC7	P38797	343 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	SET5	P38890	526 aa	Known RBP	7.05	□□□□□ -1.28
TRP1	YDR007W	GTS1	P40956	396 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	OYE3	P41816	400 aa	Predicted RBP	7.05	□□□□□ -1.28
TRP1	YDR007W	YFL066C	P43538	392 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	RET2	P43621	546 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	RAI1	P53063	387 aa	Known RBP	7.05	□□□□□ -1.28
TRP1	YDR007W	NPY1	P53164	384 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	HDA1	P53973	706 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	ENA2	Q01896	1091 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	CEF1	Q03654	590 aa	Predicted RBP	7.05	□□□□□ -1.28
TRP1	YDR007W	CRR1	Q05790	422 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	NSI1	Q12457	570 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	ENA5	Q12691	1091 aa		7.05	□□□□□ -1.28
TRP1	YDR007W	PRC1	P00729	532 aa		7.04	□□□□□ -1.28
TRP1	YDR007W	KIN2	P13186	1147 aa	Known RBP	7.04	□□□□□ -1.28
TRP1	YDR007W	TYE7	P33122	291 aa	Predicted RBP	7.04	□□□□□ -1.28
TRP1	YDR007W	SAF1	P38352	637 aa		7.04	□□□□□ -1.28
TRP1	YDR007W	CCT5	P40413	562 aa	Known RBP	7.04	□□□□□ -1.28
TRP1	YDR007W	YKR011C	Q02209	353 aa		7.04	□□□□□ -1.28
TRP1	YDR007W	DAL3	P32459	195 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	FUI1	P38196	639 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	YFL052W	P43551	465 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	PUS2	P53167	370 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	PBP1	P53297	722 aa	Known RBP	7.03	□□□□□ -1.28
TRP1	YDR007W	ECM9	Q02202	377 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	ATG16	Q03818	150 aa		7.03	□□□□□ -1.28
TRP1	YDR007W	ECM16	Q04217	1267 aa	Known RBP	7.03	□□□□□ -1.28
TRP1	YDR007W	MSB1	P21339	1137 aa	Known RBP	7.02	□□□□□ -1.29
TRP1	YDR007W	HSP78	P33416	811 aa		7.02	□□□□□ -1.29
TRP1	YDR007W	TAT1	P38085	619 aa		7.02	□□□□□ -1.29
TRP1	YDR007W	SLN1	P39928	1220 aa	Predicted RBP	7.02	□□□□□ -1.29
TRP1	YDR007W	PIP2	P52960	996 aa		7.02	□□□□□ -1.29
TRP1	YDR007W	NSG2	P53898	299 aa		7.02	□□□□□ -1.29

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms