RNA–Protein interactions for RNA: YBR258C

SHG1, Transcript of Subunit of the COMPASS (Set1C) complex, yeast

Gene SHG1, Length 429 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHG1	YBR258C	TSL1	P38427	1098 aa	Known RBP	4.29	□□□□□ -1.72
SHG1	YBR258C	CCC2	P38995	1004 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	NPP2	P39997	493 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	NUP82	P40368	713 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	HFM1	P51979	1187 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.29	□□□□□ -1.72	not detected
SHG1	YBR258C	YDL124W	Q07551	312 aa	Known RBP	4.29	□□□□□ -1.72
SHG1	YBR258C	RSB1	Q08417	382 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	SVS1	Q12254	260 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	POL1	P13382	1468 aa		4.29	□□□□□ -1.72
SHG1	YBR258C	ADE8	P04161	214 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	AAR2	P32357	355 aa	Predicted RBP	4.28	□□□□□ -1.72
SHG1	YBR258C	HSP78	P33416	811 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	SAH1	P39954	449 aa	Known RBP	4.28	□□□□□ -1.72
SHG1	YBR258C	RNH70	P53331	553 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	ALG12	P53730	551 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	LCD1	Q04377	747 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	YLR125W	Q12138	136 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	ENT1	Q12518	454 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	PDR11	P40550	1411 aa		4.28	□□□□□ -1.72
SHG1	YBR258C	NUP188	P52593	1655 aa	Known RBP	4.27	□□□□□ -1.73
SHG1	YBR258C	TOP3	P13099	656 aa		4.27	□□□□□ -1.73
SHG1	YBR258C	MSD1	P15179	658 aa	Known RBP	4.27	□□□□□ -1.73
SHG1	YBR258C	PPH3	P32345	308 aa		4.27	□□□□□ -1.73
SHG1	YBR258C	RFC5	P38251	354 aa		4.27	□□□□□ -1.73
SHG1	YBR258C	YAP1801	P38856	637 aa		4.27	□□□□□ -1.73
SHG1	YBR258C	UBP6	P43593	499 aa	Known RBP	4.27	□□□□□ -1.73
SHG1	YBR258C	ALO1	P54783	526 aa	Known RBP	4.27	□□□□□ -1.73
SHG1	YBR258C	MSC2	Q03455	724 aa		4.27	□□□□□ -1.73
SHG1	YBR258C	SEC7	P11075	2009 aa	Known RBP	4.27	□□□□□ -1.73
SHG1	YBR258C	ERR1	P0CX10	437 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	ERR2	P0CX11	437 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	PHO8	P11491	566 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	YER158C	P40095	573 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	TOK1	P40310	691 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	CCM1	P48237	864 aa	Predicted RBP	4.26	□□□□□ -1.73
SHG1	YBR258C	MAL11	P53048	616 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	XYL2	Q07993	356 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	YDL177C	Q12257	170 aa		4.26	□□□□□ -1.73
SHG1	YBR258C	KIN2	P13186	1147 aa	Known RBP	4.25	□□□□□ -1.73
SHG1	YBR258C	CDC48	P25694	835 aa	Known RBP	4.25	□□□□□ -1.73
SHG1	YBR258C	DOM34	P33309	386 aa		4.25	□□□□□ -1.73
SHG1	YBR258C	OMA1	P36163	345 aa		4.25	□□□□□ -1.73
SHG1	YBR258C	YRO2	P38079	344 aa		4.25	□□□□□ -1.73
SHG1	YBR258C	VMR1	P38735	1592 aa		4.25	□□□□□ -1.73
SHG1	YBR258C	FOL2	P51601	243 aa	Known RBP	4.25	□□□□□ -1.73
SHG1	YBR258C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
SHG1	YBR258C	RSM24	Q03976	319 aa		4.25	□□□□□ -1.73
SHG1	YBR258C	IMH1	Q06704	911 aa	Known RBP	4.25	□□□□□ -1.73
SHG1	YBR258C	IML1	P47170	1584 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	SRM1	P21827	482 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	LIP5	P32875	414 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	REC104	P33323	182 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	MAC1	P35192	417 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	ERT1	P38140	529 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	YBR284W	P38150	797 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	ECM21	P38167	1117 aa	Known RBP	4.24	□□□□□ -1.73
SHG1	YBR258C	GDH3	P39708	457 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	ECL1	P48235	211 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	OSW2	Q12202	724 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	YPR071W	Q12346	211 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	DFG16	Q99234	619 aa		4.24	□□□□□ -1.73
SHG1	YBR258C	MSH2	P25847	964 aa		4.23	□□□□□ -1.73
SHG1	YBR258C	TSA1	P34760	196 aa	Known RBP	4.23	□□□□□ -1.73
SHG1	YBR258C	EMC3	P36039	253 aa		4.23	□□□□□ -1.73
SHG1	YBR258C	SFB2	P53953	876 aa		4.23	□□□□□ -1.73
SHG1	YBR258C	TOM70	P07213	617 aa	Known RBP	4.22	□□□□□ -1.73
SHG1	YBR258C	APL1	P27351	700 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	ALG2	P43636	503 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	YGR283C	P53336	341 aa	Predicted RBP	4.22	□□□□□ -1.73
SHG1	YBR258C	SNO2	P53823	222 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	UGO1	Q03327	502 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	YDR132C	Q03900	495 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	POB3	Q04636	552 aa	Known RBP	4.22	□□□□□ -1.73
SHG1	YBR258C	URN1	Q06525	465 aa	Known RBP	4.22	□□□□□ -1.73
SHG1	YBR258C	CDA1	Q06702	301 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	ENV7	Q12003	364 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	MDM12	Q92328	271 aa		4.22	□□□□□ -1.73
SHG1	YBR258C	CYC1	P00044	109 aa	Predicted RBP	4.21	□□□□□ -1.74
SHG1	YBR258C	PPG1	P32838	368 aa		4.21	□□□□□ -1.74
SHG1	YBR258C	LRG1	P35688	1017 aa		4.21	□□□□□ -1.74
SHG1	YBR258C	POL12	P38121	705 aa	Predicted RBP	4.21	□□□□□ -1.74
SHG1	YBR258C	FPR3	P38911	411 aa	Known RBP	4.21	□□□□□ -1.74
SHG1	YBR258C	MND2	P40577	368 aa		4.21	□□□□□ -1.74
SHG1	YBR258C	ATP25	Q03153	612 aa		4.21	□□□□□ -1.74
SHG1	YBR258C	STH1	P32597	1359 aa		4.21	□□□□□ -1.74
SHG1	YBR258C	GAL10	P04397	699 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	MET6	P05694	767 aa	Known RBP	4.2	□□□□□ -1.74
SHG1	YBR258C	CDC6	P09119	513 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	HSF1	P10961	833 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	THI4	P32318	326 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	SPC29	P33419	253 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	SPC42	P36094	363 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	ETP1	P38748	585 aa	Known RBP	4.2	□□□□□ -1.74
SHG1	YBR258C	GYP8	P43570	497 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	LYS4	P49367	693 aa	Predicted RBP	4.2	□□□□□ -1.74
SHG1	YBR258C	HSV2	P50079	448 aa	Predicted RBP	4.2	□□□□□ -1.74
SHG1	YBR258C	SGD1	Q06132	899 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	ADY3	Q07732	790 aa		4.2	□□□□□ -1.74
SHG1	YBR258C	TOM1	Q03280	3268 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms